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6 protocols using nb600 594

1

Tissue Histological Analysis Protocol

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Tissues were stained with hematoxylin (Gill 2, Cancer Diagnostics, Durham, NC) and eosin (Cancer Diagnostics, Durham, NC) or Verhoeff Van Geison (American MasterTech, Lodi, CA) following manufacturer’s protocols. Immunohistrochemistry utilized the DAKO Envision Chromophore Kits for mouse (K4006) and rabbit (K4010) following manufacturer’s instructions. Primary antibodies for collagen 1A1 (Santa Cruz, SC-293182) and collagen 3A1 (Novus Biologicals, NB600–594) were applied at 1:100 ratios and incubated overnight at 4°C. The tissue overview was visualized using a high resolution document scanner (Epson America, Long Beach, CA).
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2

Western Blot Analysis of Fibrosis Markers

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Cell pellets were extracted in RIPA lysis buffer (P0013C, Beyotime, China) containing protease inhibitor cocktail (539131, Calbiochem, USA). Protein concentrations were determined by a BCA kit (23225, Pierce, USA). Equal amounts of cell extracts (30 μg total protein) were electrophoresed on sodium dodecyl sulfate-polyacrylamide gels, and then transferred onto polyvinylidene difluoride membranes (Millipore, USA). The membranes were blocked in 5% non-fat dried milk in TBS-T at room temperature for 2 h and incubated with indicated primary antibodies at 4 °C overnight. The primary antibodies used in the study were: anti-α-SMA (1 µg/mL, A5228, Sigma-Aldrich), anti-collagen I (1 µg/mL, 600-401-103, Rockland), anti-collagen III (1 µg/mL, NB600-594, Novus), anti-Klf2 (2 μg/mL, ab203591, Abcam), anti-GAPDH (1 µg/mL, 5174, Cell signaling technology). The membranes were washed three times with TBS-T for 10 min, and then incubated with IRDye-680LT Goat Anti-Mouse IgG (H+L) (20 ng/mL,925-68020, Li-Cor, USA) or IRDye-800CW Goat Anti-Rabbit IgG (H+L) (20 ng/mL, 925-32211, Li-Cor, USA) at room temperature for 1 h. After washing in TBS-T for another three times, the membranes were detected by the Odyssey infrared imaging system (Li-Cor, USA). Experiments were repeated three times and the target protein level was quantified by Image J and normalized to internal control.
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3

Immunofluorescence Analysis of Macrophage Polarization and Collagen Deposition

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RAW264. 7 or HGF-1 cells seeded in confocal dishes were fixed with 4% paraformaldehyde at 4°C for 15 minutes after washed by PBS 3 times for 20 minutes each time. The cells were then permeabilized with 0. 2% Triton X-100 for 10 minutes and blocked with 2% BSA for 2 hours, and each step was followed by twice PBS washes to remove residual reagents. After the above steps were completed, primary antibodies were added to the cells and incubated at 4°C overnight. The primary antibodies were added as follows: Piezo1 antibody and CD68 were co-incubated to localize Piezo1 on macrophages; CCR7 (1:200;NB100-712; Novus Biologicals, USA) and CD206 (1:200; #24595; Cell Signaling Technology, USA) were co-incubated to identify macrophage polarization; COL-I (1:200;NB600-408; Novus Biologicals, USA) or COL-III (1:200; NB600-594; Novus Biologicals, USA) was incubated to indicate the existence of collagen in HGF-1. Afterwards, the cells were incubated with donkey anti-goat secondary antibody IgG H&L Alexa Fluor 594 (1:200; ab150132; Abcam, UK) and the goat anti-rabbit IgG H&L Alexa Fluor 488 for one hour at room temperature in the dark. After washing away the secondary antibodies with PBS, DAPI was used to stain the nuclei for 10 minutes in the absence of light. Finally, the images were acquired by the confocal laser scanning microscope and quantitatively analyzed by Image J software.
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4

Investigating TGF-β Signaling Pathways

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Recombinant mouse TGF-β protein (7666-MB) was purchased from R&D Systems (Minneapolis, MN). Angiotensin II (AngII) (CSN10313) was purchased from CSNpharm (Chicago, IL). Antibodies against α-smooth muscle actin (α-SMA) (ab5694, for immunoblot analysis), phospho-SMAD3 (SMAD family member 3) (ab52093), and KDM5B (ab181089, for immunofluorescence analysis) were obtained from Abcam (Cambridge, UK). Antibodies against collagen type I (AB765p) were obtained from Millipore (Billerica, MA). Antibodies against α-SMA (5228, for immunofluorescence and immunohistochemistry) were obtained from Sigma‒Aldrich (Darmstadt, Germany). Antibodies against collagen type III (NB600-594) were obtained from Novus Biologicals (Littleton, CO). Antibodies against phospho-SMAD2 (SMAD family member 2) (3108), SMAD2 (5339), SMAD3 (9523), phospho-ERK (extracellular signal-regulated MAP kinase) (9106), ERK (4696), phospho-JNK (c-Jun N-terminal kinase) (4668), JNK (9252), phospho-p38 (4511), p38 (9212), phospho-p65 (3033 S), p65 (8242), Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (5174) and ATF3 (18665) were obtained from Cell Signaling Technology (Danvers, MA). Antibodies against KDM5B (A301-813A, for immunoblot analysis) were obtained from Bethyl Laboratories (Montgomery, TX).
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5

Protein Expression Analysis in Cardiac Ventricles

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Total proteins were extracted from left and right ventricle, protein concentrations were determined through bicin choninic acid (BCA) method. After electrophoresis (SDS‐PAGE), transmembrane, blocking (milk protein), incubation with primary anti‐TH polyclonal antibody (1:200, ab137869; Abcam), anti‐NPY polyclonal antibody (1:1000, ab137869; Abcam), anti‐GAP43 monoclonal antibody (1:300, ab117265; Abcam), anti‐PGP9.5 monoclonal antibody (1:200, ab8189; Abcam), anti‐collagen I polyclonal antibody (1:500, GTX20292; GeneTex), anti‐collagen III polyclonal antibody (1:500, NB600‐594; Novusbio, Littleton, CO, USA), and secondary antibody (Goat‐anti‐rabbit, Goat‐anti‐mouse; KPL, Milford, MA, USA), and colouration, immunoreactive bands were obtained. Then the images were captured, and semi‐quantitatively analysed by Quantity One (Bio‐Rad).
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6

Western Blot Analysis of Extracellular Matrix Proteins

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Cultured fibroblasts were washed in PBS and lysed in Tris–HCl buffer (pH 6.8) containing SDS (2.5%), glycerol (10%), 100 mM 2-mercaptoethanol (Sigma, St Louis, MO), Protease Inhibitor Cocktail (Roche) and phosphatase inhibitor sodium orthovanadate (2 nM, Sigma-Aldrich). Samples were passed through a QIAshredder column (Qiagen) at 10,000 rpm for 5 min, boiled for 5 min and separated on a 10% or a 4–20% Mini-PROTEAN TGX Precast Gel (both from Bio-Rad) depending on the molecular weight of target proteins. Gels were run for 15–25 min at 300 V before blotting to nitrocellulose membranes using the Trans-Blot Turbo Transfer System and Turbo blotter (both from Bio-Rad) and blocking with 5% Blotting-Grade Blocker (Bio-Rad). Primary antibodies to COL3A1 (NB600-594, NovusBio), COL5A1 (NBP1-19633, NovusBio), IL33 (Alx-804-840-0000, Enzo), TAGLN (Ab14106, Abcam) or TUBB (loading control, Ab6046, Abcam) were incubated over night at 4 °C. After the incubation of appropriate secondary horseradish peroxidase-conjugated antibody for 2 h at RT, the protein bands on the membrane were detected with Pierce SuperSignal West Dura Extended Duration Substrate (Thermo Fischer Scientific) and visualized using a ChemiDoc MP System (Bio-Rad).
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