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7 protocols using fe edta

1

Tetrahymena thermophila Strain Characterization

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In this work the following Tetrahymena thermophila strains were used; CU248.1 (mpr1-1/mpr1-1; pm-S, mp-S, VII), B2086 (mpr1-1/mpr1-1; pm-S, mp-S, II) and SB1969 (chx1-1/chx1-1, mpr1-1/mpr1-1; pm-S, cy-S, II) (the last one was kindly supplied by E. Orias (University of California, Santa Barbara, USA). Micronuclear genotypes of these strains are homozygous for mpr1-1 (6-methyl-purine resistant) and chx1-1 (cycloheximide resistant), and macronuclear phenotypes are pm-S (paromomycin sensitive), mp-S (6-methyl-purine sensitive) and cy-S (cycloheximide sensitive). All strains were grown axenically at 30 ± 1 °C in SPPA medium (2 % proteose peptone (Difco), 0,1 % yeast extract (Difco), 0.2% glucose (Sigma), 0.003% Fe-EDTA (Sigma), supplemented with 250 µg/ml penicillin G and streptomycin sulfate (Sigma) and 0.25 µg/ml amphotericin B (Sigma) or PP210 medium (Diaz et al., 2007 (link)).
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2

Breast Cancer MCF-7 Cell Line Characterization

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The human breast adenocarcinoma (MCF-7) cell line was obtained from the Egyptian Holding Company for Biological Products and Vaccines (VACSERA, Giza, Egypt). Ammonium nitrate, magnesium sulfate, potassium nitrate, boric acid, cobalt chloride, cupric sulfate, manganese sulfate, potassium iodine, sodium molybdate, zinc sulfate, citric acid and sodium citrate were purchased from Wako Pure Chemical Industries® (Tokyo, Japan). Calcium chloride, dextrose, potassium hexacyanoferrate II, potassium hexacyanoferrate III and sodium carbonate were obtained from Merck® (Darmstadt, Germany), while potassium phosphate, sodium chloride, ferrous sulfate, Na2-EDTA2H2O, nicotinic acid, pyridoxineHCl, thiamineHCl, Fe-EDTA, 4-morpholineethanesulfonic acid, τ-inositol, sucrose, phytoagar, sodium phosphate, silymarin, triton X-100, 5-bromo-4-chloro-3-indoly-β-d-glucuronide and α-Rhamnase were purchased from Sigma-Aldrich Corp. (St. Louis, MO, USA). 17β-estradiol was purchased from Takeda Chemical Industries Ltd. (Osaka, Japan). Solvents used were of analytical grade unless mentioned and were purchased from Merck, J.T. Backer® (Deventer, The Netherlands) and Theo Seulberger® (Karlsruhe, Germany). Media and supplements for cell cultures were obtained from Gibco®/Invitrogen (Karlsruhe, Germany) and Greiner Labortechnik® (Frickenhausen, Germany).
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3

Preparing Fe-EDTA Contrast Solution

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Contrast solutions were prepared as 8 g Fe-EDTA (Sigma-Aldrich, St. Louis, MO, USA) and 24 g NaCl (VWR Chemicals) to 368 g demineralized water, with Fe-EDTA dissolved before adding NaCl.
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4

Antibody-Functionalized Gold Nanoparticles

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AuNP conjugates were prepared using 15 nm AuNPs (1×, 1.4 × 1012 particles mL−1; BBI Solutions, Cardiff, UK) or 40 nm AuNPs (1×, 9.0 × 1010 particles mL−1; BBI solutions). HRP-conjugated mouse anti-cTnI Ab (4T21C-19C7) was purchased from Hytest (Turku, Finland). The conjugate-synthesis procedures of AuNP-Ab-HRP and AuNP-(ald)HRP-Ab were described in our previous study [23 (link)]. Briefly, the AuNP-(ald)HRP-Ab conjugate (ald)HRP (Thermo Fisher Scientific, Waltham, MA, USA) was physically adsorbed to the AuNP surface, and the unbound (ald)HRP particles were eliminated via centrifugal washing. Then, an anti-cTnI Ab (4T21-19C7; Hytest) was linked to the AuNP-(ald)HRP complex through covalent coupling. For the centrifugal washing, we used centrifugation speeds of 21,000× g (for 15 nm AuNPs) and 7600× g (for 40 nm AuNPs). The AuNP-(ald)HRP-Ab conjugates were concentrated 20× in 50 μL of storage buffer containing 10 mM Fe-EDTA (Sigma), 5% (w/w) trehalose (Sigma), and 0.05% (w/w) BSA (Fitzgerald, Acton, MA, USA) in 10 mM phosphate-buffered saline (PBS; pH 7.4).
The absorbance spectra of AuNPs and AuNP-(ald)HRP-Ab conjugates were measured using a UV-2450 UV-Vis spectrophotometer (Shimadzu, Kyoto, Japan). The hydrodynamic diameter was analyzed by dynamic light scattering (DLS, ELSZ-1000; Otsuka Electronics Co., Ltd., Osaka, Japan).
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5

Germination and Growth of Arabidopsis Mutants

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Mutants and transgenic lines were derived from Landsberg erecta (ga1-3; gai; ga1-3 global-DELLA; global-DELLA; pRGA:GFP-RGA) or Columbia-0 (ga1-3col; pIRT1:GUS; p35S:FIT-GFP) ecotypes as previously described (Silverstone et al., 2001; Vert et al., 2002; Tyler et al., 2004; Cheminant et al., 2011; Sivitz et al., 2011) . Plants were grown on soil or on plates containing 0.53 Murashige-Skoog (MS) medium (Sigma), 0.5% sucrose, and 1% ultrapure agar (Merck) under a 16-hr photoperiod at 22 C. For iron-deficiency experiments, 7-day-old seedlings grown on 0.53 MS medium containing 50 mM Fe-EDTA (Sigma) were transferred on iron-depleted medium without Fe and containing 150 mM ferrozine (FZ; Sigma), a strong iron chelator. As GA-deficient ga1-3 mutants do not germinate without exogenous GA, the seeds were pretreated at 4 C with 5 mM GA 3 (Sigma-Aldrich) for 3 days to synchronize germination, washed thoroughly three times, then surface sterilized before sowing.
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6

Tetrahymena Mating Induction Protocol

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Wild-type Tetrahymena strains CU428.2 (mating type VII, RRID:TSC_SD00178), B2086 (mating type II, RRID:TSC_SD01627), and SB210 (mating type VI, RRID:TSC_SD00703) were obtained from the Tetrahymena Stock Center, Cornell University (https://tetrahymena.vet.cornell.edu/). ΔSPO11 (Mochizuki et al., 2008 (link)), SPO11i (Howard-Till et al., 2013 (link)), and Asf1-GFP (Garg et al., 2013 (link)) strains were constructed previously. Cells were grown at 30°C in SPP medium containing 1% proteose peptone (Becton Dickinson, Sparks, MD, USA), 0.1% yeast extract (Becton Dickinson), 0.2% glucose (Sigma-Aldrich, St. Louis, MO), and 0.003% EDTA-Fe (Sigma-Aldrich). To make them competent for mating, cells at mid-log phase (approximately 106/ml) were washed with 10 mM Tris-HCl (pH 7.4), resuspended in 10 mM Tris-HCl (pH 7.4), and starved at 30°C for ~18 hr to starve. To induce mating, equal numbers of cells of two different mating types were mixed together and incubated at 30°C.
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7

Tetrahymena Stress Response Protocol

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Wild-type Tetrahymena thermophila strain CU428.2 was grown at 30 °C, shaking at 100 rpm, in super proteose peptone (SPP) medium containing 1% proteose peptone (Becton Dickinson, Sparks, MD, USA), 0.1% yeast extract (Becton Dickinson), 0.2% glucose (Sigma-Aldrich, St. Louis, MO, USA), and 0.003% EDTA-Fe (Sigma-Aldrich). Cells were untreated or treated with 500 μg/mL or 2.5 mg/mL of 1,10-phenanthroline for 1, 5, or 30 min. Cells were collected, then fixed with 10% (w/v) trichloroacetic acid (TCA; Sigma-Aldrich) and incubated on ice for 30 min. After removal of TCA by centrifugation at 12,000× g for 2 min, cell pellets were lysed in PAGE sample buffer (2% SDS ([Sigma-Aldrich], 2.5% 2-mercaptoethanol [Sigma-Aldrich], 10% glycerol [Sigma-Aldrich], and 50 mM Tris-HCl, pH 6.8) and boiled for 5 min prior to analysis by SDS-PAGE and immunoblot. Antibodies used were anti-Tetrahymena SUMO (1:1000; Gift from Jim Forney), or anti-β-actin antibody (1:1000; GenScript, Piscataway, NJ, RRID:AB_914102).
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