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15 protocols using interleukin 6 (il 6)

1

Immunohistochemical Analysis of Inflammatory Cytokines

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Wuzhou Liupao tea was sourced from Wuzhou tea factory (Zhuang Autonomous Region, Guangxi, China). The Huoxiang Zhengqi oral liquid was purchased from MINJI Pharmaceutical Co., Ltd (Jiangxi, China). Lard oil was bought from GLOD GIFT FOOD Co., Ltd (Zhejiang, China). EDTA (pH 9.0) antigen repair solution, PBS buffer (pH 7.4), BSA solution, neutral balsam, TNF-α, IL-6, IL-1β, goat anti-rabbit IgG, goat anti-mouse IgG, and the DAB chromogenic kit were purchased from Service-Bio Co., Ltd (Wuhan, China). Ethanol and xylene were acquired from Sinopharm Chemical Reagent Co., Ltd (Shanghai, China).
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2

Immunofluorescence Analysis of Kidney Injury

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TUNEL kits (Servicebio, G1501) were used to detect apoptotic cells in paraformaldehyde-fixed kidney tissues, and the appropriate experimental protocols were applied. For immunofluorescence in tissues, paraffin sections were blocked with 10% donkey serum and incubated overnight at 4 °C with primary antibodies nephrin (1:100, Invitrogen, PA5-106921), podocin(1:100, Proteintech, 20384-1-AP), cd2ap(1:100, Invitrogen, PA5-51894), TNF-α(1:500, Servicebio, GB11188), IL-6(1:500, Servicebio, GB11117), IL-1β(1:300, Servicebio, GB11113), and LC3(1:500, Proteintech, 14600-1-AP), followed by secondary antibodies. Finally, the nuclei were restained with DAPI and observed under a confocal microscope (Olympus, FV3000).
For immunofluorescence in cells, each group of cells were given the corresponding treatment and sequentially subjected to cell rupture, serum closure, incubated with the corresponding primary antibodies nephrin (1:100, Invitrogen, PA5-106921), podocin (1:100, Proteintech, 20384-1-AP), cd2ap (1:100, Invitrogen, PA5-51894), and LC3(1:500, Proteintech, 14600-1-AP) overnight at 4 °C and secondary antibodies. Finally, after DAPI restaining nuclei, the cells were observed under confocal microscopy.
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3

Immunohistochemical Analysis of Inflammatory Cytokines in Spinal Tissues

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Isolated spines and adjacent vertebral bodies were fixed in 4% paraformaldehyde, decalcified, dehydrated, cleared with dimethylbenzene and embedded in paraffin (Tissue Tek processor and Leica embedder, Buffalo Grove, IL). The sections (5 μm) were incubated with 3% hydrogen peroxide to block endogenous peroxidase activity for 10 min and 5% bovine serum albumin was used to block nonspecific binding sites for 30 min at 37°C. Following incubation with the primary antibody (IL-1β 1:1,000, IL-6 1:800, TNF-α 1:1,000, Servicebio, Wuhan, China) overnight at 4°C, the sections were treated with diaminobenzidine-based peroxidase substrate (DAB Horseradish Peroxidase Color Development Kit, Beyotime Biotechnology, Shanghai, China) to visualize the immunoreactivity. The images were acquired under 50× and 400× magnification using the light microscopy mode of the fluorescence microscope and the intensity was quantified by the Image-Pro Plus 6.0 software.
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4

Analysis of Metabolic Markers in Clam Mactra chinenesis

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Mactra chinenesis was purchased from a seafood supermarket (Lianyungang, China). Commercial kits for the determination of alcohol dehydrogenase (ADH), aldehyde dehydrogenase (ALDH), total cholesterol (TC), triacylglyceride (TG), alanine aminotransferase (ALT), serum aspartate aminotransferase (AST), superoxide dismutase (SOD), and malondialdehyde (MDA) were purchased from Grace Biotechnology Co., Ltd. (Suzhou, China). Detection kits for quantification of interleukin-1β (IL-1β) and tumor necrosis factor-α (TNF-α) were obtained from Xinyu Biotechnology Co., Ltd. (Shanghai, China). Antibodies against phospho-adenosine 5′-monophosphate (AMP)-activated protein kinase (p-AMPK), toll-like receptor 4 (TLR4), cytochrome P450 2E1 (CYP2E1), myeloid differential protein-88 (MyD88), peroxisome proliferator-activated receptor-α (PPAR-α), carnitine palmitoyltransferase 1a (Cpt1a), sterol regulatory element binding protein 1c (SREBP-1c), and interleukin-6 (IL-6) were bought from Servicebio Technology Co., Ltd. (Wuhan, China). A protein content determination kit was offered by Beyotime Biotechnology Co., Ltd. (Shanghai, China). Chinese spirits (alcohol content of 56%) were provided by Red Star Co., Ltd. (Beijing, China). Other chemical reagents were of analytical grade.
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5

Immunohistochemical Analysis of Apoptosis and Inflammation Markers

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For immunohistochemistry (Kusakawa et al., 2015 (link)), the slides were incubated with antibodies against caspase-3 (1:750, rabbit source, Servicebio, Wuhan, China), TNF-α (1:500, rabbit source, Servicebio, Wuhan, China), and IL-6 (1:1000, rabbit source, Servicebio, Wuhan, China) overnight at 4°C. Subsequently, paraffin sections of the tissues were washed with PBS, and the secondary antibody was added and incubated for 1 h.
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6

Immunohistochemical Analysis of Cytokines and Chemokines

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For immunohistochemical analysis, the dewaxed sections were boiled in 10 mmol/L citrate buffer for 20 min for epitope retrieval following washing three times in PBS. After incubating in 3% hydrogen peroxide, the sections were blocked with 1% BSA for 1 hour. The slices were incubated with anti-rat antibodies against IL-10 (1:200, Servicebio, China), TGF-β3 (1:200, Servicebio, China), IL-6 (1:400, Servicebio, China), TNF-α (1:300, Servicebio, China), IFN-γ (1:150, Servicebio, China), α-SMA (1:1000, Servicebio, China), MCP-1 (1:500, Servicebio, China), CCR2 (1:800, Servicebio, China) and CCRL2 (1:200, Servicebio, China) at 4°C overnight and then incubated with HRP labeled Goat anti-rabbit IgG general secondary antibody (DAKO, Denmark). Finally, the antibody binding was visualized by using a DAB kit (Thermo Scientific). All sections were imaged using an automatic slide scanning system (AxioScan.Z1, Zeiss, Germany) at 20X magnification.
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7

Multiplex Immunofluorescence Staining Optimization

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Conforming to the standard protocol, immunofluorescence staining was executed using the following antibodies and dilutions: TNF-α (1:500; Servicebio, Wuhan, Hubei, China), IL-6 (1:500; Servicebio, Wuhan, Hubei, China), and F4/80 (1: 1,000; Servicebio, Wuhan, Hubei, China). After being deparaffinized and rehydrated, the samples were subjected to epitope retrieval by microwaving the slides in an EDTA antigen retrieval buffer with a pH value of 8.0 (Servicebio, Wuhan, Hubei, China). The samples were first permeabilized with BioDewax and Clear Solution (Servicebio, Wuhan, China) and blocked with 3% BSA. Only one antigen was found in each stage, which included primary and secondary antibody incubation, as well as tyramine signal amplification (TSA) visualization. After protein blocking and epitope retrieval as mentioned prior, the next antibody was labeled. To finally stain the nuclei of the cells, the samples were counterstained with 4′,6-diamidino-2-phenylindole (DAPI). The immunofluorescent images were visualized and captured using the PANNORAMIC MIDI (3DHISTECH™, Budapest, Hungary) at 200× magnification. Semi-quantitative image analysis was performed with ImageJ software. The data were presented as relative fluorescence intensity to the Con group.
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8

Histological Evaluation of Tissue Alignment

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The histological observation methods were similar to those previously reported (Jiao et al., 2022a (link)). Briefly, after fixation, embedding and section, Hematoxylin-eosin (HE) and Masson tri-chrome staining were performed. The method of evaluating fiber alignment was described in the previous studies (Adeoye et al., 2022 (link)) (Ozlu et al., 2019 (link)) (Erisken et al., 2013 (link)). For immunohistochemical staining, we incubated sections overnight with different antibodies (COL I, COX-2, IL-6; Servicebio; China). On the next day, the sections were incubated with the secondary antibody (HRP-anti-rabbit IgG, Servicebio, China). After that, they were observed and captured.
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9

Immunohistochemical Analysis of MMP13 and IL-6

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After dewaxing and antigen retrieval, the sections were washed 3 times with phosphate buffer solution (PBS, pH = 7.4). Then, they were soaked in 0.3% hydrogen peroxide for 25 min to block endogenous peroxidase at room temperature and washed on a decolorizing shaker three times. After 30 min incubation with 3% Bovine Serum Albumin (BSA), the primary antibody against MMP13 (Abcam, 1:100) or IL-6 (Servicebio, 1:100) in PBS was incubated overnight at 4 °C. The secondary antibody was incubated for 50 mins followed by diaminobenzidine solution (DAB). Nuclei were counterstained with hematoxylin for 3–8 min. Then, the sections were dehydrated and sealed and analyzed using ImageJ.
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10

Immunohistochemical Analysis of Renal IL6, LC3, and BECN1

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Immunohistochemistry was performed as previously described (Tu et al., 2017 (link)). The renal tissue slides were incubated with primary antibodies against IL6 (1:500), LC3 (1:500), and BECN1 (1:500) (Servicebio), as well as the primary antibodies CD206 (1:500, sc-58986) and ARG1 (1:500, sc-271430) (Santa Cruz Biotechnology) overnight at 4°C. The slices were subsequently incubated with horseradish peroxidase-conjugated anti-rabbit secondary antibodies (1:500) (Servicebio). Changes in the kidneys and the positively stained areas were observed using light microscopy (Olympus, Tokyo, Japan). The percentages of the positive areas were calculated by Image-Pro Plus 5.0 software.
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