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13 protocols using repo gal4

1

Drosophila melanogaster Strains for Circadian Research

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The following strains of Drosophila melanogaster were used: w1118, CantonS, yw;tim-Gal4 (Emery et al., 1998 (link)), UAS-belleRNAi (VDRC #6299), GMR-Gal4 (BDSC #8440), ninaE-Gal4 (BDSC #1104), repo-Gal4 (BDSC #7415), pdf-Gal4 (BDSC #6900), Eaat1-Gal4 (BDSC #8849), Lama-Gal4 (BDSC #35543), per0 (Smith and Konopka, 1981 (link)), yw;P{EPgy2}belEY 08943 (BDSC #19945); P{PZ}belcap-1ry506/TM3, ryRK Sb1 Ser1 (BDSC #11778), bel::GFP (Morin et al., 2001 (link)) (Kyoto Stock Centre #ZCL2696), UAS-CD8-GFP (BDSC #5137). Co-IP was performed with yw; tim-GAL4/+; UAS-HAcry/+ (Dissel et al., 2004 (link)). Flies were maintained on a standard cornmeal medium under LD 12:12 regime and at constant 23°C.
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2

Drosophila Neuronal Cell Labeling and Imaging

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The following stocks were employed - y[1] w[*]; Mi{y[+mDint2]=MIC}Syt1[MI02197] (BDSC#35973) (Venken et al., 2011 (link)), y(1) w(*) Mi(y[+mDint2]=MIC) Sh(MI10885) (BDSC#56260), y(1) w(*);Mi(y[+mDint2]=MIC)Shal(MI10881) (BDSC#56089) (Venken et al., 2011 (link)), y(1) w(*); Mi(y[+mDint2]=MIC) Shab(MI00848) (BDSC#34115) (Venken et al., 2011 (link)), nSyb-GAL4(GMR57C10)(BDSC#39171) (Pfeiffer et al., 2008 (link)), repo-GAL4 (BDSC#7415) (Sepp et al., 2001 (link)), repo-QF2 (BDSC#66477) (Lin and Potter, 2016 (link)), Shaw-GAL4 (BDSC#60325) (Venken et al., 2011 (link); Li-Kroeger et al., 2018 (link)), Ddc-GAL4(BDSC#7009) (Feany and Bender, 2000 (link)), TH-GAL4(BDSC#8848) (Friggi-Grelin et al., 2003b (link)), Trh-GAL4(BDSC#38389) (Alekseyenko et al., 2010 (link)), UAS_H2A-GFP (Sherer et al., 2020 (link)), QUAS_H2B-mCherry (Sherer et al., 2020 (link)), brp-GAL4 (this manuscript), UAS_H2A::GFP-T2A-mKok::Caax (this manuscript). All lines were raised on standard media at 25°C, 50% RH.
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3

Drosophila Housing and Crossing Protocols

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Animals were housed at 25 °C with a 12-h light:dark cycle on standard cornmeal, agar, and molasses food media. For conditional studies with temperature-sensitive (ts) shibirets mutants8 (link),10 (link),40 (link), animals were raised at 18 °C with 12-h light:dark cycle until pharate pupal day 4 (D4), then transferred to 30 °C for 2 days before analyses. All lines were generated from the following stocks via either recombination or genetic crossing: (1) w111868 (link); (2) y,w;pin1/cyo;repo-QF2/Tm6,tb (BDSC#66477); (3) QUAS-shibirets (BDSC#30012); (4) wg,sp/ cyo,draper∆5/Tm6,Sb,Tb36 (link); (5) repo-Gal4/Tm3,Sb (BDSC#7415); (6) y,w; UAS-draper-RNAi/cyo36 (link); (7) w1118;R86E01-Gal4 (BDSC#45914); (8) w1118; R56F03-Gal4; (BDSC#39157); (9) w1118; R54H02-Gal4 (BDSC#45784); (10) w1118; dfmr150M/Tm6,Tb,GFP50 (link); (11) y,w; UAS-Draper-I (BDSC#67035); (12) w1118; PDF-Gal428 (link); (13) w1118; UAS-mCD8::GFP45 (link); (14) w1118; elav-Gal429 (link); (15) y,w; UAS-dfmr1-RNAi (BDSC#35200); (16) y,w; UAS-InRDel (BDSC#8248); (17) w1118; shrub4/cyo67 (link); (18) w1118; UAS-shrub67 (link); (19) w1118; InRE19(HR)62; and (20) w1118; InRWildType(HR)62.
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4

Drosophila Melanogaster Genetic Toolkit

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Fly stocks are maintained in the standard cornmeal-based fly food in a 25°C incubator with humidity control. Larvae and adults are cultured in the light: dark (LD) condition with a 12-hour light: 12-hour dark light schedule. Unless otherwise noted, all larvae were collected between ZT1-ZT3 (ZT: zeitgeber time in a 12:12 hr light dark cycle; lights-on at ZT0, lights-off at ZT12). The following Drosophila melanogaster stocks were used for experiments: Obp44a-gRNA, UAS-Obp44a::GFP, UAS-CD2::mCherry, Obp44a::GFP CRISPR knock-in, and Obp44a CRISPR knock-out, are generated in this study. Obp44a-Gal4 (GMR90C03; BDSC 47122); UAS-CD8::GFP (BDSC 5137); UAS-RedStinger (BDSC 8547); Canton-S (wild-type for this study; BDSC 64349); UAS-Nsf2-RNAi (BDSC 27685); alrm-Gal4 (gifted by Dr. Marc Freeman); repo-Gal4 (BDSC 7415); elav-Gal4 (BDSC 458); repo-Cas9 (gifted by Dr. Chun Han); Pdf-Gal4 (BDSC 6899); UAS-GCaMP7f (BDSC 86320); tub-mito-roGFP2-Grx1 (BDSC 67669)
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5

Transgenic Fly Strain Protocols

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Injections of transgenes for fly strains reported in this study were performed by Bestgene, Inc. Other fly stocks: repo-GAL4 (Sepp et al., 2001 (link)) (BDSC #7415), n-syb-GAL4 (Bushey et al., 2009 (link)), n-syb-QF2 (Riabinina et al., 2015 (link)), n-syb-LexA (Shearin et al., 2013 (link)), TrpA1-QF, and nompC-QF (Petersen and Stowers, 2011 (link)), QUAS-FLP (Potter et al., 2010 (link)), Brp-FRT-STOP-FRT-V5 (Chen et al., 2014 (link)), LexAop-GFP11 and UAS-CD4-GFP1-10 (Gordon and Scott, 2009 (link)), UAS-spGFP1-10::Nrx (Fan et al., 2013 (link)), UAS-syb::spGFP1-10 (Macpherson et al., 2015 (link)), vGlut-LexA (Baek et al., 2013 (link)), 24B-GAL4 (Brand and Perrimon, 1993 (link)).
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6

Comprehensive Drosophila Genetics Toolkit

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FRT19A, fzrA (#52384), FRT19A, fzrB (#52385), and Dp(1;3)DC120 (#30265) were obtained from BDSC. FRT19A, fzrG0418 (#111943) was obtained from Kyoto Stock Center. UAS-Fzr-HA (#F000893) was obtained from FlyORF. UAS-HA-Rca1 is a gift from Dr. Frank Sprenger (Grosskortenhaus and Sprenger, 2002 (link)) and FRT19A, fzr8F3 (P{neoFRT}19A/FM7) was a gift from Dr. Christian Klambt. EGFP-FzrBAC was generated in this study.
RNAi lines used in this study: erm_RNAi (BDSC #26778), fzr_RNAi (GD#25553), cdc20_RNAi_1 (GD#40500), cdc20_RNAi_2 (GD#44834), ida_RNAi (BDSC#34522); brm_RNAi (GD#37720), β-gal_RNAi (BDSC#50680), and bcd_RNAi (GD#48966).
Neural stem cell drivers included insc-Gal4 (BDSC#8751; 1407-Gal4) or wor-Gal4 (BDSC#56553). Glial driver was repo-Gal4 (BDSC#7415). Type I NSC driver (ase-Gal4; UAS-mCD8-GFP, T. Lee). Type II NSC driver (w; UAS-Dicer2, wor-Gal4, ase-Gal80; UAS-mCD8-GFP) (Bowman et al., 2008 (link)). INP driver (erm-Gal4/CyO) (Pfeiffer et al., 2008 (link)). Other drivers used in this study are: nerfin-1-Gal4, UAS-mCD8-GFP (Louis Y. Cheng), pros-Gal4 (BDSC#80572), and elav-Gal4 (BDSC#458). UAS-Dcr2 (BDSC#24650) or/and UAS-CD8-GFP (BDSC#32186) was used together with various Gal4 drivers or RNAi stocks.
Experiments with mutants were performed at 25°C, and experiments for RNAi-mediated knockdown or overexpression were carried out at 29°C.
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7

Genetic Manipulation of Drosophila Neural Circuits

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All flies were maintained at 25°C on a 12-hour light/dark cycle and raised on standard corn meal media (Bloomington Stock Center). The following stocks were obtained from the Bloomington Drosophila Stock Center (Bloomington, IN): UAS-ATPα-RNAi (BDSC# 32913, RRID:BDSC_32913), 10XUAS-IVS-myr::tdTomato (referred to as UAS-tdTomato, BDSC#32222, RRID:BDSC_32222) and repo-GAL4 (BDSC# 7415, RRID:BDSC_7415). The ATPα::GFP reporter line was generated by the FlyTRAP project (Morin et al., 2001 (link)), and the UAS-ATPα line (RRID:FlyBase_FBst0500173) was obtained from FlyORF (Bischof et al., 2013 (link)). The following Dube3a and UBE3A lines were used in this study and described previously (Reiter et al., 2006 (link)): UAS-Dube3a, UAS-Dube3aC/A, and UAS-UBE3A. elav-GAL4 was provided by Dr. Hugo Bellen and UAS-GFP was provided by Dr. Cynthia Hughes. See Table S1 for a complete list of stocks.
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8

Investigating Drosophila DNA Damage Repair

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The following fly stocks were used in this study: UAS-DDB1, UAS-DDB1RNAi-Res, ddb1HK-2-3, ddb1W197 (generated in this study), ddb15-1, cul4G1-3, cul4JJ11, UAS-Flag-Cul4, UAS-Flag-Cul4KR (CT Chien); mahj1 [36 (link)]; UAS-Myc-Mahj, UAS-Myc-MahjR1120/1123E (this study). The following fly strains were obtained from BDSC: β-galRNAi (#50680), UAS-CD8-GFP (#32186), wtsRNAi (#34064), mahjRNAi1 (#34912) and UAS-YkiS168A (#28818); RNAi lines including ddb1RNAi (#44974) and cul4RNAi1 (#105668), cul4RNAi2 (#44829) and mahjRNAi2 (#110669) were obtained from the VDRC. Df(2R) XE2900 (#108418) is from the Kyoto Drosophila Genomics and Genetic Resource.
NSC drivers included insc-Gal4 (BDSC#8751; 1407-Gal4) or insc-Gal4, tub-Gal80ts. Glial driver was repo-Gal4 (BDSC# 7145). Ubiquitous driver was tub-Gal4 (BDSC#5138). UAS-Dcr2 (BDSC#24650) was used together with various RNAi stocks. ddb1 and mahj RNAi knockdown efficiency was verified by immunostaining of anti-DDB1 and anti-Mahj antibodies in larval brains.
All experiments with mutants were carried out at 25 °C, and experiments for RNAi knockdown or overexpression were performed at 29 °C.
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9

Drosophila Neurological Genetics Toolkit

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Fly stocks were maintained using standard techniques, cultured at 25°C in 60% relative humidity. The following stocks were used in this study: Repo-Gal4 (BDSC #7415); R54H02-Gal4 (BDSC #45784); Nrv2-Gal4 (BDSC# 6799); UAS-Ube3A (BDSC# 90376); UAS-Wnk RNAi (BDSC #62150; #42521); UAS-Fray RNAi (BDSC #55878; #42569); UAS-HDAC4 RNAi (BDSC #28549; #34774); UAS-LexA RNAi (BDSC #67945); UAS-mCD8-RFP (BDSC# 32218); SeiTS1, Eag1Shaker120 and NCKXzydeco are gifts from Troy Littleton; UAS-RnSPAKD219A, UAS-WnkWT, and UAS-FrayT206E were gifts from Aylin Rodan.
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10

Fly Rearing and Gene Knockdown

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Flies were raised on standard yeast/cornmeal/agar media, at 25°C, 50% humidity and a 12-hour light/12-hour dark daily cycle, under uncrowded conditions. For the RNAi experiments, flies were raised at 29°C to reach the maximum efficacy of the apllied Gal4-UAS directed expression system. The following D. melanogaster stocks were used: Oregon R, Nrv2-GFP (BDSC stock no. 6828), repoGal4 (BDSC, stock no. 7415), UAS-CD2-HRP (BDSC, stock no. 9906), UAS-Dfabp RNAi (Transgenic RNAi Project—HMS01163), UAS-myr-RFP (BDSC, stock no. 7119), repoflp (gift from Christian Klämbt, Institut für Neurobiologie, Universitat Münster, Münster, Germany); UAS-Lsd2-EGFP (gift from Ronald P. Kühnlein, Max-Planck-Institut für Biophysikalische Chemie, Göttingen, Germany), cortex glia specific Gal4 driver (NP2222, Kyoto Stock Center), Act > CD2 > GAL4 (gift from Gábor Juhász, Eötvös Loránd University, Budapest, Hungary), dfabpEP3252 (Szeged Stock Center), Dfabp-GFP (115–074, Kyoto Stock Center). Oregon R flies were used as control for the histological experiment. For the RNAi experiments, control animals carried the same chromosome set except for the UAS-dfabp-RNAi transgene containing chromosome which was replaced with a wild type one (Oregon R).
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