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5 protocols using gene frame

1

Fluorescent Microscopy of Sporulating Cells

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Live-cell fluorescence imaging was performed by placing cells on a 2% (wt/vol) agarose pad prepared in resuspension medium and set using a Gene Frame (Bio-Rad). When sporulating cells reached the desired time point, 200 μL of the culture was pelleted by centrifugation and then resuspended in 10 μL of resuspension medium containing the membrane dye TMA-DPH [1-(4-trimethylammoniumphenyl)-6-phenyl-1,3,5-hexatriene p-toluenesulfonate] (0.05 mM). After gentle vortexing, 2 μL of the cell suspension was spread on the agarose pad, and a coverslip was placed on top of the Gene Frame. Cells were imaged by standard epifluorescence using a Zeiss Axioplan 2 microscope equipped with 100× objective NA 1.4. Membrane fluorescence from the TMA-DPH dye was captured using an exposure time of 400 ms. Cyan fluorescent protein (CFP) and GFP images were each acquired with an acquisition time of 800 ms, except GFP-SpoIIP, which had an acquisition time of 2,000 ms.
When required, sporulating cells were treated with 50 μg/mL of cephalexin at T2 (2 h after the onset of sporulation) and then incubated for a further 1 h before preparation for imaging as described above.
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2

Fluorescence Microscopy Visualization Protocol

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Fluorescence microscopy was performed with an Olympus BX61 microscope as previously described [58 (link)]. Cells were mounted on a 2% agarose pad containing resuspension medium using a gene frame (BioRad). Fluorescent signals were visualized with a phase contrast objective UplanF1 100x and captured with a monochrome CoolSnapHQ digital camera (Photometrics) using MetaMorph software version 7.7 (Molecular devices). The membrane dye 1-(4-trimethylammoniumphenyl)-6-phenyl-1,3,5-hexatriene p-toluenesulfonate (TMA-DPH, Molecular Probes) was used at a final concentration of 50 μM and exposure times were typically 500 ms. The DNA dye 4’, 6-diamidino-2-phenylindole dihydrochloride (DAPI, Molecular Probes) was used at 2 μg/mL and exposure times were typically 200 ms. At least two biological replicates were performed for all microscopy experiment. Images were analyzed, adjusted and cropped using MetaMorph software.
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3

Fluorescence Microscopy of Cell Membranes

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Fluorescence microscopy was performed with an Olympus BX61 microscope as previously described (Doan et al., 2009 (link)). Cells were mounted on a 2% agarose pad containing resupsension medium using a gene frame (BioRad). Fluorescent signals were visualized with a phase contrast objective UplanF1 100x and captured with a monochrome CoolSnapHQ digital camera (Photometrics) using Metamorph software version 6.1 (Universal Imaging). The membrane dye TMA-DPH (Molecular Probes) was used at a final concentration of 0.01 mM and exposure times were typically 200 ms. Images were analyzed, adjusted and cropped using Metamorph software.
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4

Fluorescence Microscopy of Membrane-Bound Proteins

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Cells were mounted on a 2% agarose pad containing resuspension medium using a gene frame (Bio-Rad, Hercules, CA, USA). Cells were concentrated by centrifugation (3,300 g for 30 seconds) prior to mounting and visualization. This step had no impact on the localization of the fusion proteins. Fluorescence microscopy was performed using a Leica (Buffalo Grove, IL, USA) DMi8 wide-field inverted microscope equipped with an HC PL APO 100×DIC objective (NA = 1.40) and an iXon Ultra 888 EMCCD Camera from Andor Technology (Belfast, Northern Ireland). Membranes were stained with TMA-DPH at a final concentration of 100 μM. Excitation light intensity was set to 50%, and exposure times were 300 ms for TMA-DPH (λex = 395/25 nm; λem = 460/50 nm); 500 ms for m(E)GFP (λex = 470/40; λem = 500 to 550); and 1 second for mYFP (λex = 510/25; λem>530) respectively. Images were acquired with Leica Application Suite X (LAS X), and analysis and processing were performed using the ImageJ software [97 (link)].
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5

Live-Cell Fluorescence Imaging of Sporulating Cells

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Live-cell fluorescence imaging was performed by placing cells on a 2% (w/v) agarose pad prepared in resuspension medium and set using a gene frame (Bio-Rad). When sporulating cells reached the desired time-point, 200 μL of the culture was pelleted by centrifugation, and then resuspended in 10 μL of resuspension medium containing the membrane dye TMA-DPH (1-(4-trimethylammoniumphenyl)-6-phenyl-1,3,5-hexatriene p-toluenesulfonate) (0.05 mM) or FM 4–64 (N-(3-Triethylammoniumpropyl)-4-(6-(4-(Diethylamino) Phenyl) Hexatrienyl) Pyridinium Dibromide) (0.67 μg/μL). After gentle vortexing, 2 μL of the cell suspension was spread on the agarose pad, and a coverslip was placed on top of the gene frame. Cells were imaged by standard epifluorescence microscopy using a Zeiss Axioplan 2 Microscope equipped with 100x objective N/A 1.4. A DAPI filter to excite the TMA-DPH membrane dye with an exposure time of 400 ms. CFP, GFP, and YFP filters were used with exposure times of 600 ms, 800 ms, and 1000 ms, respectively. 3D-structured illumination microscopy was performed using the DeltaVision OMX SR microscope equipped with Olympus PlanApo N 60x objective lens N/A 1.42. The 1.515 immersion oil was selected after calculating the refractive index using softWoRx software. mCherry/A568 and GFP/A488 filters were used with exposure times of 15–20 ms and 10–15% intensity (%T).
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