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6 protocols using n hexanoyl dl homoserine lactone

1

CRISPR-Cas9 Editing of Salmonella Typhimurium

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S. enterica serovar Typhimurium NCTC 12023, and the S. Typhimurium ΔssaV mutant were kindly provided by Hensel’s lab (Germany). Plasmids pCRISPR and pCas9 were obtained from Addgene (http://www.addgene.org/, accessed on 12 May 2021) with No. 42875 and 42876, respectively [25 (link)]. Plasmids were introduced into S. enterica strains by electroporation, and recombinant strains were cultured in medium containing kanamycin (50 µg/mL), or chloramphenicol (25 µg/mL). All enzymes used to clone CRISPR plasmids and restriction endonuclease were provided from New England Biolabs, USA. Tryptone soy broth (TSB), Tryptic Soy Agar (TSA), Mueller Hinton (MH) broth and agar and Luria–Bertani (LB) broth and agar were purchased from Oxoid (Hampshire, UK). Dulbecco′s Modified Eagle′s Medium (DMEM) medium was obtained from Sigma-Aldrich (St. Louis, MO, USA). The used N-acylhomoserine lactones is N-hexanoyl-DL-homoserine lactone (CAS Number: 106983-28-2) was ordered from Sigma-Aldrich (St. Louis, MO, USA). All used chemicals were of pharmaceutical grade.
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2

Detecting Quorum Sensing Signals in Turbot

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Live turbot were collected from a local aquatic products market (Jinzhou, China) and transferred to the laboratory with oxygenated water. The fish were killed and rinsed with sterile water. Then, the sample was vacuum-packed and refrigerated at −2 °C for 28 days. N-butanoyl-dl-homoserine lactone (C4–HSL), N-hexanoyl-dl-homoserine lactone (C6–HSL), N-octanoyl-dl-homoserine lactone (C8–HSL), N-decanoyl-dl-homoserine lactone (C10–HSL), N-dodecanoyl-dl-homoserine lactone (C12–HSL), N-tetradecanoyl-dl-homoserine lactone (C14–HSL) were purchased from Sigma-Aldrich (Poole, UK). Other reagents used in this study were commercially available and of analytical grade. Chromobacterium violaceum CV026 and Agrobacterium tumefaciens A136 were stored at our laboratory.
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3

Quorum Sensing Regulation of Plant Pathogens

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The soil isolate Lysinibacillus sp. Gs50 was grown in Luria-Bertani (LB) medium at 30°C. Pectobacterium carotovorum subsp. carotovourm BR1 (laboratory stock) was used as QS pathogen in the studies. It produces 3-oxo-hexanoyl homoserine lactone (3OC6HSL) which regulates the expression of the plant cell wall degrading enzymes polygalacturonase (PG) and pectin lyase (PNL); these enzymes cause soft rot in various host plants [35 (link)]. PccBR1 was grown in LB medium at 30°C. Chromobacterium violaceum CV026 was used as biosensor strain for detecting exogenous AHLs with acyl chains of C4 to C8 in length. C. violaceum CV026 produces purple pigment in response to short chain AHLs [36 (link)]. It was grown in LB medium with 30 μg ml-1 of Kanamycin. Escherichia coli strains DH5α and BL21 (DE3) were grown in LB medium at 37°C and 100μg ml-1 of Ampicillin was added when necessary. N-butanoyl-L-homoserine lactone (C4HSL), N-hexanoyl-DL-homoserine lactone (C6HSL), 3-oxo-hexanoyl-L-homoserine lactone (3OC6HSL), N-octanoyl-L-homoserine lactone (C8HSL) and 3-oxo-octanoyl-L-homoserine lactone (3OC8HSL) were purchased from Sigma-Aldrich.
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4

Quorum Sensing Inhibition Assay

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Chromobacterium violaceum CV026 (CECT599) a biosensor strain for short-chain AHLs, wild type C. violaceum (MTCC2656) and P. aeruginosa (MTCC 424) reported for AHL production was used for determining the QS inhibitory potential of thirty-four bacterial isolates from our departmental culture collection. All the strains were cultured in Luria Bertani (LB) broth at 37 °C. CV026 was supplemented with 10 μM of N-hexanoyl-dl-homoserine lactone (Sigma-Aldrich, India) to stimulate violacein pigmentation unless otherwise stated.
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5

Vanillin Degrades Bacterial Quorum Sensing

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Degradation of bacterial signal molecule by vanillin, the experiment with Chromobacterium violaceum CV026 was conducted followed by the method in our previous study [24] . N-Hexanoyl-DL-homoserine lactone (HHL; Sigma-Aldrich, USA) was used as an QS marker in this experiment. Briefly, HHL stock was solubilized in solution with 0.1% acetic acid and 100 mM ethyl acetate. HHL was then diluted with 10 mM potassium phosphate buffer to be concentration of 1 μM. The AHL indicator bacterium, C. violaceum CV026, was cultivated in Luria-Bertani (LB) medium for 24 h, centrifuged, and then rinsed three times with 0.9% NaCl. For the evaluation of QSI activity, 1 mM vanillin was supplemented in to the C. violaceum CV026 culture, and violacein was extracted by a protocol described elsewhere [25] . Finally, the supernatant in which violacien was contained was extracted, and the absorbance was measured using a UV spectrophotometer (Hach, USA) at 585 nm.
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6

Quorum Sensing Inhibition Assay

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Chromobacterium violaceum strain 026 (CV026) was grown in Luria Bertani broth (LB) with 20 µg/mL Kanamycin (SIGMA) and 5 µg/mL of N-Hexanoyl-DL-Homoserine Lactone (SIGMA) for 48 h at a temperature of 32°C with 140 rpm aerobically to an estimated concentration of 10 9 cell/mL. 20 mL of CV026 were mixed with 80 mL soft LB Agar (0.8%, SIGMA) and homogenized. The mixture was poured onto hard Agar (1.5%) to have a double layer, after its solidification, wells were made in the upper layer using a sterile Pasteur pipette. 20 µL of the prepared extract of each dilution was filled in the prepared well. Negative controls consist of distilled water; the positive control was Trans-cinnamaldehyde (SIGMA Aldrich) at 0.1M. Plates were incubated overnight at 32°C, CV026 was used to detect and respond to the presence of Acyl Homoserines lactones (AHL) molecules through the synthesis of purple pigmentation (violacein), absence of the purple color indicated inhibition of violacein and degradation of AHL molecules (degradation of QS activity). The diameters of the non pigmented observed zones were measured (Noorashikin et al., 2016). To confirm the degradation of AHL another assay was performed as follows.
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