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3 protocols using anti atf3

1

Mechanical Stretch-Induced DRG Neuroplasticity

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Lumbar DRG-sciatic nerve/central branch explants were dissected as described above (see Section 2.5). Following 3 h of 10% mechanical stretch, DRG were dissected from their respective nerves and fixed with 4% PFA for 4 h at RT. Then, DRG were washed once with 1× PBS and then kept in 30% sucrose solution for 24 h at +4 °C. DRG were cryosected in 18 μm-thick sections. Sections were permeabilized in 0.25% TritonX-100/1× TBS solution and blocked in 5% donkey serum/1× TBS solution for 2 h at RT. Sections were incubated o/n with the primary antibody, anti-ATF3 (Activating Transcription Factor 3, 1:200, rabbit, Novus Biologicals, NBP1-85816, Littleton, CO, USA), anti-H3K9K14ac (Histone 3 lysine 9 lysine 14 acetylation, 1:1000, rabbit, Sigma Aldrich, ZRB06599, St. Louis, MO, USA), and β-III-tubulin (1:2000, mouse, Promega GmbH, G7121, Walldorf, Germany), diluted in 0.25% TritonX-100/1% donkey serum in 1× TBS solution. DRG were washed three times with 1× TBS and then incubated for 1 h at RT with the secondary antibody, AlexaFluor-594 (1:1000, donkey anti-rabbit, Life Technologies, A21207, Carlsbad, CA, USA), AlexaFluor-488 (1:1000, donkey anti-mouse, Life Technologies, A21202, ThermoFischer, MA, USA). DRG were washed three times with 1× TBS and counterstained with DAPI for 15 min. Sections were washed once with 1× TBS and coverslipped with Fluoromount-G.
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Immunohistochemical Analysis of Retinal Tissue

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Eyes were harvested and fixed for 1 h in 4% PFA. Following cryopreservation in 10%, 20%, and 30% sucrose at 4°C for 30 min, 2 h and overnight, respectively, eyes were embedded in Tissue-Tek OCT compound (Electron Microscopy Sciences) and sectioned at 10 μm using a cryostat. The following primary antibodies were incubated with tissue sections overnight at 4°C: anti-Iba1 (1:200, Abcam), anti-CD68 (1:250, Bio-Rad), anti-GFAP (1:500, Abcam), anti-DLK (1:100, Genetex), anti-Atf3 (1:200, Novus Biologicals), anti-GFP (1:500, Abcam), anti-Il22Ra1 (1:200, Bioss), anti-Rbpms (1:100; PhosphoSolutions), anti-βIII-tubulin antibody (1:500, Promega). Following primary antibody application and washing, tissue was subsequently incubated in AF594, AF546, AF647, or AF488 secondary antibodies (1:400; Invitrogen, Thermo Fisher) for 1 h. DAPI (1:1000; Invitrogen) was used to label nuclei. Images were captured using an Axio Imager M2 (Zeiss), a LSM 880 confocal (Zeiss), or a TCS SP8 confocal (Leica). To visualize AAV infection in wholemount retinas, tissue was stained with an anti-GFP (1:500, Abcam) antibody for 3 d at 4°C. Retinas were subsequently washed in PBS, incubated with an AF488 secondary antibody (1:400; Invitrogen) for 2 h at room temperature, and washed in PBS.
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3

Immunohistochemical Analysis of Retinal Tissue

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Eyes were harvested and fixed for 1 h in 4% PFA. Following cryopreservation in 10%, 20%, and 30% sucrose at 4°C for 30 min, 2 h and overnight, respectively, eyes were embedded in Tissue-Tek OCT compound (Electron Microscopy Sciences) and sectioned at 10 μm using a cryostat. The following primary antibodies were incubated with tissue sections overnight at 4°C: anti-Iba1 (1:200, Abcam), anti-CD68 (1:250, Bio-Rad), anti-GFAP (1:500, Abcam), anti-DLK (1:100, Genetex), anti-Atf3 (1:200, Novus Biologicals), anti-GFP (1:500, Abcam), anti-Il22Ra1 (1:200, Bioss), anti-Rbpms (1:100; PhosphoSolutions), anti-βIII-tubulin antibody (1:500, Promega). Following primary antibody application and washing, tissue was subsequently incubated in AF594, AF546, AF647, or AF488 secondary antibodies (1:400; Invitrogen, Thermo Fisher) for 1 h. DAPI (1:1000; Invitrogen) was used to label nuclei. Images were captured using an Axio Imager M2 (Zeiss), a LSM 880 confocal (Zeiss), or a TCS SP8 confocal (Leica). To visualize AAV infection in wholemount retinas, tissue was stained with an anti-GFP (1:500, Abcam) antibody for 3 d at 4°C. Retinas were subsequently washed in PBS, incubated with an AF488 secondary antibody (1:400; Invitrogen) for 2 h at room temperature, and washed in PBS.
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