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8 protocols using cmpd101

1

Pharmacological Evaluation of Novel Compounds

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The following drugs were used: acetylcholine, diethyl amine (DEA) NONOate, diltiazem, and 5-HT (Sigma Chemical, St. Louis, MO); apelin-13 and F13A trifluoro-acetate salt (Bachem, Torrance, CA); CMPD 101 (Tocris, Ellisville, MO); and CMF 019 (Aobious, Gloucester, MA). Drug solutions were freshly prepared in double-distilled water with the exception of CMF-019 and CMPD 101, which were dissolved initially in DMSO and followed by further dilutions in double-distilled water.
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2

Synthesis and Characterization of Novel Lipid Compounds

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Purchased from commercial vendors: 6-OAU (Cayman Chemical 17687), DL-175 (Tocris 7082), capric acid (Sigma C1875), myristic acid (Sigma M2138), forskolin (Cambridge Bioscience SM18-2), cmpd101 (Tocris 5642), MK-2206 (APExBio A3010), U0126 (Cell Guidance Systems SM106), calyculin A (ab141784), pertussis toxin (Tocris 3097), DMSO (Sigma D8418), Tween-80 (Sigma 8.22187), BSA (Sigma A7906), PBS (Thermo 14190094), Tris-buffered saline (Sigma T5941, T6066, S9888), Tween-20 (Sigma P1379), RIPA buffer (Millipore 20-188), protease and phosphatase inhibitors (Sigma 11836170001, P5726, P5726; CST 8553), non-fat dry skim milk powder (Sigma 70166), collagen I (Merck C3867), formaldehyde (Thermo 28906), Hoechst 33342 (ImmunoChemistry technologies 639).
Antagonist 8 (2-((1,4-Dioxan-2-yl)methoxy)-9-hydroxy-6,7-dihydro-4H-pyrimido[6,1-a]isoquinolin-4- one, CAS ID 1445846-30-9) was synthesised as previously described [2]. DL-222 (2-(2-((4-chloronaphthalen-1-yl)oxy)ethyl)pyridine 1-oxide) was synthesised as previously described [11].
Synthesis of (rac)-3-hydroxy capric acid is provided in Supplementary Information.
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3

Opioid Receptor Ligand Synthesis and Characterization

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DAMGO [D-Ala2, N-Me-Phe4, Gly5-ol]-enkephalin acetate salt (catalog no. E7384), DADLE [D-Ala2, N-Me-Phe4, Gly5-ol]-enkephalin acetate salt (catalog no. E7131) DPDPE [D-Pen2,5]-enkephalin hydrate (catalog no. E3888) and isoproterenol hydrochloride (catalog no. I6504) were purchased from Sigma-Aldrich. SNC80 (catalog no. 0764), ARM-390 (catalog no. 4335), ICI 174,864 (catalog no. 0820), CTAP (D-Phe-Cys-Tyr-D-Trp-Arg-Thr-Pen-Thr-NH2, catalog no. 1560), and Cmpd101 (catalog no. 5642) were purchased from Tocris. Morphine sulfate [Chemical Abstracts Service (CAS) no. 6211-15-0] and fentanyl (CAS no. 1443-54-5) were obtained from the University Hospital of Geneva with Département de la sécurité, de la population et de la santé (DSPS) authorization from the Canton of Geneva.
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4

Synthesis and Evaluation of H4R Ligands

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Poly-l-lysine, PTx, forskolin, and
histamine were purchased from Sigma-Aldrich (St. Louis, MO, USA).
All other H4R ligands were synthesized in the Medicinal
Chemistry Department of the Vrije Universiteit Amsterdam (Amsterdam,
The Netherlands).17 (link) Cmpd101 was obtained
from Tocris Bioscience (Bristol, UK). Dulbecco’s modified Eagle’s
medium (DMEM), Hanks’ balanced salt solution (HBSS), BCA protein
assay kit, On-target plus β-arrestin1, β-arrestin2, and
control siRNA were purchased from Thermo Fisher Scientific (Waltham,
MA, USA). All other chemicals were of analytical grade and purchased
from standard commercial suppliers.
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5

PACAP-38 Protocol for Signaling Pathways

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PACAP (PACAP-38) was purchased from Peptide Institute (Minoh, Osaka, Japan). H89 and CMPD101 were purchased from Tocris Bioscience (Bristol, UK). D-sphingosine and Concanavarin A (ConA) were purchased from Sigma-Aldrich (St Louis, MO, USA) and Pitstop 2 (ab120687) was purchased from Abcam (Cambridge, UK).
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6

Chemokine CXCL12 Signaling Analysis

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CXCL12 was obtained from Almac. CMPD101 was obtained from Tocris Bioscience. Hanks’ balanced salt solution, Dulbecco’s Modified Eagle medium and penicillin/streptomycin were obtained from Gibco. Fetal bovine serum was obtained from Bodinco (Alkmaar, Netherlands). Coelenterazine-h was obtained from Promega (Madison, WI, USA).
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7

Receptor Internalization Assay Protocol

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Internalization assays were performed using the Nano-Glo HiBiT extracellular detection system acquired from Promega Corporation (Cat. No. N2421). The day before transfection, HEK293 cells were seeded in 96-well plates at a density of 2.5 × 104 cells per well. The following day, cells were transfected with a mixture prepared containing 0.5 ng of SmBiT-high-affinity-Galr2 construct and 0.2 μl Lipofectamine 2000 (Invitrogen) added to each well. At 24 h post transfection, wells allocated for inhibitor pretreatment cells were pretreated with 30 μM of GRK2/3 inhibitor cmpd101 from Tocris Bioscience (Cat. No. 5642) for 30 min, 25 μM of clathrin inhibitor PitStop 2 from Abcam (Cat. No. ab120687) for 15 min, and 80 μM dynamin inhibitor Dynasore from Abcam (Cat. No. ab120192) for 40 min, and then treated using different agonist concentrations for 30 min, immediately after 100 μl of Nano-Glo HiBiT extracellular reagent (1 μl of LgBiT protein + 2 μl Substrate + 97 μl of Nano-Glo HiBiT buffer) was added and left to equilibrate for 4 min at room temperature without mixing. Then luminescence values were recorded immediately (Synergy 2 Multi-Mode Microplate Reader BioTek). Luminescent values were normalized in reference to cells treated with vehicle only.
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8

Opioid Receptor Modulation Protocol

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Norbinaltorphimine (norBNI) and U50,488 (NIDA Drug Supply program) were dissolved in sterile saline (0.9%) at injected at 10 mL/kg (i.p.). The GRK2/3 inhibitor CMPD101 (Tocris Bioscience) was used as described (Abraham et al., 2018 (link)).
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