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5 protocols using fusidic acid sodium salt

1

Purification and Characterization of GTP

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Fusidic acid sodium salt (Sigma-Aldrich), spectinomycin sulfate (MP Biomedicals), viomycin sulfate (USP) and hygromycin B (Sigma-Aldrich) were used at the purity stated by the commercial suppliers (≥97 %). Guanosine triphosphate (GTP), guanosine diphosphate (GDP) and GDPNP were purchased from Sigma, and GTP was further purified on a Mono Q 5/50 GL ion exchange column (GE Healthcare Life Sciences).
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2

Buffers for Single-Molecule Experiments

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All experiments were carried out in either polymix buffer A (50 mM Tris-OAc (pH 7.5), 100 mM KCl, 5 mM NH4OAc, 0.5 mM Ca(OAc)2, 5 mM Mg(OAc)2, 6 mM 2-mercaptoethanol, 0.1 mM EDTA, 5 mM putrescine and 1 mM spermidine)45 (link) or polymix buffer B (30 mM HEPES pH 7.5, 5 mM MgCl2, 50 mM NH4Cl, 5 mM 2-mercaptoethanol, 2 mM spermidine and 5 mM putrescine)46 (link). A cocktail of triplet-state quenchers (1 mM Trolox, 1 mM nitrobenzyl alcohol and 1 mM cyclooctatetraene) and an enzymatic oxygen scavenging system (protocatechuic acid (PCA)/protocatechuate-3,4-dioxygenase (PCD)) were used for smFRET experiments. Spectinomycin sulfate was purchased from MP Biomedicals. Fusidic acid sodium salt, GTP and GTPγS were from Sigma-Aldrich. GTP was further purified using a Mono Q 5/50 GL anion exchange column (GE Healthcare Life Sciences). Pyruvate kinase, myokinase and phosphoenolpyruvate (PEP) were purchased from Sigma-Aldrich. All other standard reagents were purchased from Sigma-Aldrich or VWR.
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3

Streptomyces coelicolor Antibiotic Susceptibility

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Streptomyces coelicolor strains and DNA primers used in this study are listed in Table S1 in the supplemental material. Spores of each strain, prepared according to standard procedures (4 ), were inoculated in YEME liquid medium containing 5 mM MgCl2 and 10% sucrose and grown at 30°C with shaking at 180 rpm. For antibiotic stress conditions, a freshly made solution of tetracycline hydrochloride (Sigma) or stock solutions of chloramphenicol (Sigma) or erythromycin A dihydrate (Sigma) at the indicated concentrations were treated to early exponential cells (optical density at 600 nm [OD600] of 0.1 to 0.5). For determining MIC, erythromycin (Sigma), tetracycline hydrochloride (Sigma), lincomycin hydrochloride (Fluka), chloramphenicol (Sigma), fusidic acid sodium salt (Sigma), hygromycin B concentrated solution (Duchefa), linezolid (Sigma), streptomycin sulfate salt (Sigma), thiostrepton from Streptomyces azureus (Sigma), puromycin dihydrochloride from Streptomyces alboniger (Sigma), and spectinomycin dihydrochloride pentahydrate (Fluka) were used. E. coli strains BW25113/pIJ790 and ET12567/pUZ8002 were grown and used as previously described (57 (link)), and E. coli DH5α was grown in LB medium for standard plasmid manipulations.
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4

Purification and Characterization of GTP

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Fusidic acid sodium salt (Sigma-Aldrich), spectinomycin sulfate (MP Biomedicals), viomycin sulfate (USP) and hygromycin B (Sigma-Aldrich) were used at the purity stated by the commercial suppliers (≥97 %). Guanosine triphosphate (GTP), guanosine diphosphate (GDP) and GDPNP were purchased from Sigma, and GTP was further purified on a Mono Q 5/50 GL ion exchange column (GE Healthcare Life Sciences).
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5

Culturing and Antibiotic Treatments for Bacteria

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Bacterial strains used in this study are listed in Table S1A in the supplemental material. S. coelicolor strains were grown and maintained by a standard protocol (46 ). Proper culture media (S. coelicolor in YEME with 5 mM MgCl2, 10% sucrose; E. coli, B. subtilis, and C. glutamicum in LB broth; V. vulnificus in LB with 2.5% NaCl; M. smegmatis in 7H9 medium without ferric ammonium citrate and supplemented with 0.05% Tween 80, 0.2% glucose, 0.5% bovine serum albumin, 0.085% NaCl) were used. For growth of S. coelicolor under anaerobic conditions, S. coelicolor spores were germinated and grown to mid-exponential phase (OD at 600 nm [OD600] of ∼2.0) in YEME medium and then diluted 4-fold into YEME medium that had been placed in an anaerobic chamber (Coy) after being autoclaved overnight, followed by cultivation at 30°C under hypoxic condition.
For antibiotic treatment, freshly made solutions of antibiotics (kanamycin disulfate salt, tetracycline hydrochloride, chloramphenicol, erythromycin A dihydrate, fusidic acid sodium salt, polymyxin B sulfate, novobiocin sodium salt, rifampin; all from Sigma) at the indicated concentrations were applied to the early exponential-phase cells (OD600 of ∼0.3).
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