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2 protocols using goat anti mouse af647

1

Multiparametric Flow Cytometry Analysis

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Cells were stained with cell surface antibodies against the following antigens: CXCR4 (PE-conjugated; Life Technologies, MHCXCR404), cKit (APC-conjugated; Life Technologies, CD11705). For intracellular staining, cells were fixed with 1.6% paraformaldehyde at 37°C for 20 min, then permeabilized in saponin buffer (BioLegend). Intracellular antigens were probed with the following antibodies: AAT (Santa Cruz, sc-59438), AFP (Abcam, ab169552), 2C1 (a kind gift from David Lomas and Elena Miranda), and/or BiP (Invitrogen, PA1-014A), then incubated with goat anti-mouse AF647 (Jackson ImmunoResearch, 115-605-003) and donkey anti-rabbit AF488 (Jackson ImmunoResearch, 711-545-152). To assess proliferation by EdU incorporation, cells were incubated for 24 h with 10 μM EdU, then stained using the Click-iT Plus EdU Alexa Fluor 647 Flow Cytometry Assay Kit (Life Technologies, C10635) as per manufacturer’s instructions. For all flow cytometry experiments, gating was based on isotype-stained controls. Stained cells were quantified using a Stratedigm S1000EON, and data were analyzed using FlowJo (Tree Star).
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2

Immunohistochemical Analysis of Mammary Gland

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Freshly isolated intact mammary glands were fixed in 4% PFA and processed into paraffin. A total of 4 µm sections were deparaffinised in xylene, gradually rehydrated in descending concentrations of ethanol, and subsequently treated in Borg Decloaker antigen retrieval solution (pH 6) for 30 min at 121 °C and 10 s at 90 °C using a Decloaking chamber (Biocare Medical). The samples were preblocked in PBS with 1% BSA and 0.1% Tween 20, before overnight incubation at 4 °C with primary antibodies: anti-BrdU (clone BU1/75, Abcam), anti-BrdU (Clone B44, BD Biosciences), anti-ERα (6F11, Novocastra), anti-PR (H190, Santa Cruz), anti-Keratin 5 (polyclonal, Abcam), anti-DsRed (polyclonal, Clontech), anti-GFP (polyclonal, Abcam), anti-Ki-67 (clone: SolA15, Thermo Fisher). The secondary antibodies were goat anti-mouse AF647, goat anti-rabbit Cy3 (Jackson Labs), goat anti-rat AF488 and/or goat anti-chicken AF488 (Invitrogen). Secondary antibody alone was used as a control. Sections were mounted with ProLong Gold antifade with DAPI (Invitrogen).
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