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5 protocols using d2z3b

1

Quantification of Mitochondrial Proteins

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Total protein was extracted from the H9c2 cardiomyocytes using ice-cold radioimmunoprecipitation assay (RIPA) buffer supplemented with phenylmethylsulfonyl fluoride (PMSF). Protein concentration was determined using a bicinchoninic acid assay (BCA) protein assay kit (Lot. No. 20190215, Solarbio, Beijing, China) according to the manufacturer’s instructions. The polyvinylidene difluoride (PVDF) membranes were incubated with the primary antibodies, including rabbit anti-MCU antibody (D2Z3B, Cell Signaling Technology, dilution: 1:1,000), rabbit anti-CBARA1/MICU1 antibody (D4P8Q, Cell Signaling Technology, dilution: 1:1,000), rabbit anti-MICU2 antibody (A12198, ABclonal, dilution: 1:1,000), and anti-beta actin monoclonal antibody (ab115777, Abcam, dilution: 1:200). The antigen–antibody bands were detected using enhanced chemiluminescence (ECL) solution and visualized using X-ray film (Beyotime Institute of Biotechnology). Quantification of bands was performed by densitometric analysis using Bio-Rad Quantity One. β-Actin served as an internal control.
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2

Western Blot Analysis of Mitochondrial Proteins

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HUVECs in the flow chambers were washed twice with cold phosphate‐buffered saline and lysed using RIPA buffer (ab156034; Abcam) and HaltTM protease and phosphatase inhibitor cocktail, EDTA‐free (78441; ThermoFisher Scientific). Lysates were homogenized by passing through a 25‐gauge needle and centrifuged at 14,000g for 10 min. Equal amounts of protein (20 μg/lane) were separated on 4%–12% Bis‐Tris polyacrylamide gels (WG1402BOX; ThermoFisher Scientific), transferred to a PVDF membrane (1B24001; ThermoFisher Scientific) using iBlot 2 PVDF regular stacks (IB21001; ThermoFisher Scientific), and probed with antibodies specific for MCU (D2Z3B, 1:5000; Cell Signaling), MICU1 (D4P8Q, 1:3000; Cell Signaling); MICU2 (ab101465, 1:2000; Abcam), MCUb (MBS3223833, 1:2000; MyBioSource), MCUR1 (13706, 1:3000; Cell Signaling), TOMM20 (42406S, 1:3000; Cell Signaling), and ACTB (SC47778, 1:10,000; Santa Cruz Biotechnology). Signals were visualized via chemiluminescence (SuperSignal West Pico PLUS Chemiluminescent Substrate: 34578; ThermoFisher Scientific) and quantified using ImageJ (https://imagej.nih.gov/ij/).
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3

Validating Citrin and MCU Knockdown

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For KD validation, cells were seeded on 10 cm dishes, transfected with respective siRNAs and harvested 48 h post transfection. Rabbit polyclonal citrin antibody (Abcam, ab96303) at 1:1000 dilution and rabbit monoclonal MCU antibody (Cell Signaling Technology, D2Z3B, #14997) at 1:1000 dilution were used for immunoblotting. A 1:5000 dilution of goat anti-rabbit secondary antibody was used (Santa Cruz Biotechnology, sc-2054). For phosphorylated PDH assessment, cells on 10 cm dishes were incubated in experimental storage buffer for 20 min to adjust to room temperature, followed by 5 min incubation in 2 Ca2+ buffer. After, cells were either incubated in 2 Ca2+ buffer for 5 min, in 0 Ca2+ for 5 min, or in 0 Ca2+ buffer for 1 h. Following the incubation times, cells were washed with ice cold nominally Ca2+ free buffer and harvested on ice. Phosphorylated PDH was blotted with 1:1000 dilution of rabbit mAb P-PDH S293 (Cell Signaling Technology, E4V9L, #37115), and total PDH with 1:1000 dilution of rabbit mAb PDH (Cell Signaling Technology, C54G1, #3205). A 1:5000 dilution of goat anti-rabbit secondary antibody was used (Santa Cruz Biotechnology, sc-2054). Broad Range (10-250 kDa) Color Prestained Protein Standard ladder (NEB, P7719S) was used in all blots.
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4

Quantitative Mitochondrial Protein Analysis

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For western blot analysis, rabbit polyclonal anti-IP3R (ab5804, Abcam), rabbit monoclonal anti-Grp75 (D13H4, #3593, Cell Signaling Technology), mouse monoclonal anti-VDAC1 (ab14734, Abcam), rabbit monoclonal anti-MCU (D2Z3B, #14997, Cell Signaling Technology), and mouse monoclonal anti-GAPDH antibodies were used. Western blotting and semi-quantitation were performed as the method described above.
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5

Investigating Mitochondrial Calcium Regulation in Renal Cells

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Western blot analysis was performed to detect target molecules in the renal cortex or cultured mouse podocytes. RIPA lysis buffer (89901, Thermo Scienti c) containing protease inhibitor was used to extract total cellular proteins, and the proteins were boiled at 100℃ for 10 min After SDS-PAGE on 6%-15% gels, the proteins were transferred to Immuno-Bot PVDF membranes (Bio-Rad). The membranes were blocked with 5% BSA for 1 h and then incubated overnight at 4℃ with the primary antibodies anti-IP 3 R diluted 1:1000 (ab5804, Abcam), anti-Grp75 diluted 1:1000 (#3593, Cell Signalling Technology), anti-VDAC1 diluted 1:1000 (ab14734, Abcam), anti-MCU diluted 1:1000 (D2Z3B, #14997, Cell Signalling Technology) and anti-GAPDH diluted 1:3000 (C1312, Applygen). Blots were then incubated with HRP-labelled secondary antibody diluted 1:3000 (C2247, C1309, Applygen). ImageJ software was used to semiquantitate the ratio of the target protein/GAPDH. The speci c details of these methods were the same as those that we reported previously [2] .
Immunohistochemical analysis showing glomerular expression of members of the IP 3 R-Grp75-VDAC1-
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