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6 protocols using sc 166355

1

Antibody-Based Immunoprecipitation and Immunoblotting

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For immunoprecipitation, antibodies against Flag (sc-166355) and HA (sc-805) were purchased from Santa Cruz. Anti-GST antibody (#2624, Cell Signaling Technology) was used for both immunoprecipitation and immunofluorescence (1:800). For immunoblotting, antibodies against Flag (sc-807, 1:10000; sc-166355, 1:15000), ubiquitin (sc-8017, 1:2000), and PARP-1 (sc-8007, 1:2000) were purchased from Santa Cruz, antibodies against MMP-9 (#10375-2-AP, 1:2000) and E-cadherin (#20874-1-AP, 1:2000) from Proteintech Group, antibodies against HA (#2367, 1:2500) and GAPDH (AP0063, 1:150000) were from Cell Signaling Technology and Bioworld Technology, respectively. The secondary antibody used for immunofluorescence was Rhodamine (TRITC)-conjugated goat anti-mouse immunoglobulin G (1:50, Jackson ImmunoResearch Laboratories).
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2

Immunoblotting Assay for B16F10 Cells

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For immunoblotting, B16F10 cells were lysed by PRO-PREP protein extraction solution (iNtRON Biotechnology). Briefly, 5 × 106 cells were immersed in 400 μl of the PRO-PREP solution and homogenized in ice for 10–20 min. The mixture of cell lysates was then centrifuged at 13,000 rpm for 15 min. The supernatant was collected, and the protein concentration was determined by the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific). The polypeptides were separated on 4–20% SDS–PAGE gradient gels and then transferred to a polyvinylidene difluoride (PVDF) membrane (Bio-Ras Laboratories). The member was blocked with 5% skim milk (Difco Laboratories) and underwent overnight antibody incubation Primary Abs against the following proteins were used: human/mouse NLRP3 (1:1000, AP-20B-0014, AdipoGen), human NCOA6 (1:1000, A300-411A, Bethyl Laboratories), human/mouse ASC (1:1000, sc-514414, Santa Cruz Biotechnology; AG-25B-0006, AdipoGen), IL-1β (1:500, AF-401-NA, R&D Systems), mouse cleaved caspase-1 (1:1000, AG-20B-0042, AdipoGen), FLAG (1:1000, sc-166355, Santa Cruz Biotechnology), Myc (1:1000, ab13836, Abcam), GAPDH (1:1000, sc-25778, Sigma).
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3

Ubiquitination of p57(Kip2) Protein

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CC cells with altered FBXO22 expression were co-transfected with an ubiquitin expression vector. Cells were treated with 20 μM MG132 for 6 h and lysed with 10 μM N-ethylmaleimide (Sigma-Aldrich, MO, USA) on ice for 30 min. Total protein was extracted and its concentration was determined with BCA kit. p57Kip2 was immunoprecipitated as described in the IP assay above. Ubiquitinated p57Kip2 was detect3ed with an ubiquitin antibody (1:500, sc-166355, Santa Cruz) by Western blotting analysis.
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4

Western Blot Analysis of FBXO22, p57, and GAPDH

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SiHa and C33A cells were lysed in a lysis buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, and 0.5% NP-40) containing protease and phosphatase inhibitors with a Mini tablet (Thermo Fisher, A32961) added to 10 mL of the lysis buffer. The expression of FBXO22, p57Kip2, and GAPDH was examined by Western blotting analysis as previously described [31 (link)]. The following primary antibodies were used for Western blotting analysis: mouse anti-FBXO22 (1:500, sc-100736, Santa Cruz), rabbit anti-p57 (1:1000, sc-1040, Santa Cruz), mouse anti-Ub (1:500, sc-166355, Santa Cruz), mouse anti-GAPDH (1:2500, 80602-840, Calbiochem) Image J software was used for the measurement of band density and relative expression of a protein the ratio of its band density normalized by that of its corresponding GAPDH protein band.
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5

ZIKV-NS1 Detection Enzyme Immunoassay

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MaxiSorp™ plates were coated at 4 °C overnight with mouse anti-CD81 antibody (1:100, sc-23962, Santa-Cruz Biotechnology Inc., Santa Cruz, CA, USA). Then, saturation was processed with 100 µL/well of 1X assay diluent for 1 h under agitation. CCS of HEK293 stably expressing ZIKV-NS1FLAG-tag was incubated for 2 h at room temperature. After a washing step, a mouse anti-FLAG antibody (1:100, sc-166355, Santa-Cruz Biotechnology Inc., Santa Cruz, CA, USA) was incubated for 1 h at room temperature under agitation. Finally, a goat anti-mouse-HRP antibody (ab6789, Abcam, Cambridge, UK) was added for 30 min at room temperature. Between each incubation step, wells were washed with PBS-Tween 0.05% three times. HRP activity was revealed using 50 μL of 3,3′, 5,5′-tetramethylbenzidine (TMB solution, 00-4201-56, eBioscence, Inc., San Diego, CA USA, Invitrogen) as HRP substrate, and stopped with 50 µL of HCL 0.2 N. Absorbance was read at 450 nm, with a reference at 570 nm, using a Fluostar Omega microplate reader (BMG LabTech).
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6

Immunoblot Analysis of Cellular Signaling

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Gels for SDS-PAGE or Phos-tag SDS-PAGE were prepared according to the manufacturer’s instructions (NARD Institute). Separated proteins were transferred onto a PVDF membrane and then were identified by immunoblot analysis with the appropriate primary antibodies at a dilution of 1:1000 (or as otherwise stated below). Antibody to Mob1 phosphorylated at Thr35 (1:2000 dilution; 8699), anti-Mob1 (1:2000 dilution; 13730), anti-Mst1 (1:2000 dilution; 3682), anti-Mst2 (1:2000 dilution; 3952), anti-GAPDH (1:5000 dilution; 5174), antibody to phosphorylated p38 (1:3000 dilution; 9211), antibody to phosphorylated Jnk (1:3000 dilution; 4668), and anti-β-actin (1:5000 dilution; 8457) were from Cell Signaling Technology. Anti-Rac1 (66122-1-Ig), anti-HA Rabbit (51064-2-AP), and anti-Flag Rabbit (1:3000 dilution; 20543-1-AP) were from Proteintech. Anti-gamma Tubulin (1:5000 dilution; ab11316) was from Abcam and anti-Flag Mouse (1:5000 dilution; sc-166355) was from Santa Cruz Biotechnology. The protein bands were visualized with a SuperSignal West Pico Kit according to the manufacturer’s instructions (Thermo Fisher Scientific Pierce).
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