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13 protocols using synergy 4 spectrophotometer

1

VEGF-Mediated Endothelial Cell Proliferation

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The biological activity of recombinant VEGF was assessed using a standard cell proliferation assay as previously described[33 (link)]. Briefly, human umbilical vein endothelial cells (HUVECs) were seeded onto a 96-well plate with varying concentrations of recombinant VEGF or commercial (control) VEGF (Cell Signaling). Concentrations ranged from 0.05ng/mL to 100ng/mL. Cells were allowed to proliferate for 72hr prior to treatment with 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT; Life Technologies) for 4hr, followed by solubilization of the purple formazan crystals, and absorbance reading at 570nm using a Biotek Synergy 4 Spectrophotometer (with background absorbance at 650nm subtracted).
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2

Immobilization of VEGF on Chitosan-Heparin Surfaces

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Chitosan (Sigma) was used at the manufacturer’s recommended concentration of 0.1 mg/mL to coat tissue culture treated polystyrene surfaces (TC). Coating was performed by adding sterile Chitosan solution for 12 h with rocking at 37 °C. After coating with Chitosan, the surface was washed repeatedly with sterile water to remove unbound Chitosan. Heparin (17–19 kDa) from porcine submucosa (Sigma) was dissolved in sterile water at a concentration of 5 mg/mL and then applied directly to the Chitosan treated surfaces overnight at RT. Then the surface was washed with sterile water to remove unbound Heparin and Heparin binding to Chitosan was determined using the toluidine blue binding assay as described previously74 (link).
Finally, recombinant VEGF, 10 µg/mL in phosphate buffered saline (PBS), was added to the Chitosan-Heparin surface. Binding of VEGF was optimal at 37 °C without rocking, for 2 h. VEGF binding was determined by ELISA using biotin-conjugated goat anti-VEGF antibody (100 ng/mL, 2 h, RT, R&D Systems), followed by incubation with streptavidin-HRP (1:200, 30 min, RT) and addition of substrate (TMB; Sigma). Absorbance was read at 450 nm using a Biotek Synergy 4 Spectrophotometer (with subtraction of background absorbance of 570 nm).
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3

Assessing VEGF-Induced Cell Proliferation

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The biological activity of recombinant VEGF was assessed using a standard cell proliferation assay. To this end, HUVECs were seeded onto a 96 well plate at a density of 2×103 cells per well in M199 medium (Life Technologies, Grand Island, NY) supplemented with 2% heat inactivated FBS and varying concentrations of recombinant VEGF or commercial VEGF (Cell Signaling) that was used as control. Concentrations ranged from 0.05ng/ml to 100ng/ml. Cells were allowed to proliferate for 72 hr prior to treatment with 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT; Life Technologies) for 4 hr. Then, the medium was carefully removed and replaced with 100 µl of DMSO to solubilize the purple formazan crystals. Absorbance was read at 570nm using a Biotek Synergy 4 Spectrophotometer (with background absorbance at 650nm subtracted).
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4

Assessing VEGF-Induced Cell Proliferation

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The biological activity of recombinant VEGF was assessed using a standard cell proliferation assay. To this end, HUVECs were seeded onto a 96 well plate at a density of 2×103 cells per well in M199 medium (Life Technologies, Grand Island, NY) supplemented with 2% heat inactivated FBS and varying concentrations of recombinant VEGF or commercial VEGF (Cell Signaling) that was used as control. Concentrations ranged from 0.05ng/ml to 100ng/ml. Cells were allowed to proliferate for 72 hr prior to treatment with 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT; Life Technologies) for 4 hr. Then, the medium was carefully removed and replaced with 100 µl of DMSO to solubilize the purple formazan crystals. Absorbance was read at 570nm using a Biotek Synergy 4 Spectrophotometer (with background absorbance at 650nm subtracted).
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5

Fluorescent Nucleotide-Binding Assay

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The nucleotide-binding assays were performed using the fluorescently labeled nucleotides mant-GTP [2′-/3′-O-(N’-methylanthraniloyl) guanosine-5′-O- triphosphate] (JenaBioscience)(17 (link)). Reactions of 100 μl were performed in 96 well-plates, with 1 μM of recombinant protein incubated with 0.5 μM of mant-nucleotides in buffer containing 20 mM HEPES pH 8.0, 200 mM KCl, 5 mM MgCl2, 1 mM DTT for 10 min at 30°C. The reaction mixture was then excited at 355 nm with a xenon lamp, and emission spectra were recorded between 385 and 600 nm with a 5-nm increment step using a Synergy 4 spectrophotometer (BioTek). All data were processed with Microsoft Office Excel and GraphPad PRISM.
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6

VEGF Release Kinetics from SIS

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VEGF released from SIS was assessed using in-direct ELISA. Buffers used for release kinetics include PBS, PBS + 196U/mL heparin, PBS+ 1960U/mL heparin, and growth media (EGM2; Lonza) + 10% FBS using SIS pieces with and without immobilized heparin followed by VEGF immobilization. SIS pieces (n=8 per condition) were incubated at 37°C and 10% CO2 for a total of 120hr. At time points of 24, 48, 72, and 120 hr the buffer was replaced with fresh buffer and analyzed for VEGF concentration using ELISA (VEGF Duoset, R&D Systems) according to the manufacturer’s instructions. Absorbance was read at 450nm using a Biotek Synergy 4 Spectrophotometer (with subtraction of background absorbance of 570nm). Cumulative amount of VEGF was calculated over time and normalized to the initial amount of immobilized VEGF.
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7

Heat-Induced Aggregation Assay of Citrate Synthase

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Citrate synthase (CS; Sigma) was dialysed in 20mM HEPES/KOH (pH 7.5), 150mM KCl, and 10mM MgCl2 before being used for the heat-induced aggregation assay. CS (500nM) was prepared in a final volume of 150 μl of 20mM HEPES/KOH (pH 7.5) and 2.8mM β-mercaptoethanol with different amounts of HSP90 proteins. The mixtures were added to a 96-well microplate and heated at 45 °C. Light scattering at 340nm was monitored at 45 °C in a Synergy 4 spectrophotometer (BioTek). Control measurements were performed with purified HSP90 protein alone in the absence of CS.
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8

Colorimetric Assay for COX Inhibition

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The determination of COX-1 and COX-2 enzyme inhibitory activity was performed using the kit supplied by Cayman Chemical (Ann Arbor, MI, USA). The kit depends on assaying the peroxidase activity of the enzymes and the colorimetric monitoring of the appearance of oxidized N,N,N,N-tetramethyl-p-phenylenediamine (TMPD) at 590 nm. In a transparent 96-well plate the enzymes [COX-1 (bovine) and COX-2 (human)] were diluted in the assay buffer supplied with the kit. The enzymes were then mixed with heme and the inhibitors (dissolved in DMSO at the required concentrations) and incubated for 5 min at 25 °C. The colorimetric substrate was then added to the reaction wells and the reaction was directly initiated by the addition of arachidonic acid. After 2 min the plate was read using a BioTek Synergy 4 spectrophotometer at 590 nm. The IC50 values were determined by plotting the % inhibition of the enzyme activity against the inhibitors concentration. The data presented are the mean of three different experiments.
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9

Heparin-Immobilized SIS for VEGF Delivery

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Laminated SIS tubes (4cm in length and 4.5–4.75mm diameter) were provided by Cook-Biotech Inc (West Lafayette, IN). For heparin immobilization, SIS was immersed in 10mL of 2-(N-morpholino)ethanesulfonic acid buffer (MES), pH 1.5, containing 20mM 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC), 20mM N-Hydroxysuccinimide (NHS), and heparin sulfate (8000U) and gently agitated for 36hr at 37°C. SIS was then gently washed in PBS to neutralize the reaction and remove unbound heparin. Heparin concentration on SIS was determined by comparing the unbound heparin concentration remaining in solution to the initial concentration [34 (link)]. Briefly, unbound heparin was added to toluidine blue buffer (0.1mg toluidine blue dissolved in 50mM tris-buffered saline (TBS) buffer, pH 4.5) at a ratio of 1 volume toluidine blue to 12 volumes heparin solution. The reaction proceeded for 30min prior to centrifugation and absorbance was measured at 631nm using a Biotek Synergy 4 Spectrophotometer (background absorbance of an empty well was subtracted from each value). To immobilize VEGF, heparin bound SIS was then immersed in 10mL of PBS with 3mg of recombinant human VEGF-165 for 8hr, washed with PBS, and either immediately implanted or analyzed. VEGF remained immobilized on the heparin surface by utilizing the heparin binding domain[35 (link)].
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10

Extracellular DNA Detection in sEVs

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sEVs were divided into two groups and pipetted into a black 96-well plate to determine the position of the ecDNA. One group of sEVs was treated with 0.05% Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA), which disrupted the vesicular membrane, thereby releasing the DNA into extracellular space. The second group of sEVs remained intact. Sytox Green Nucleic Acid Stain (0.05 μM) (Thermo Fisher Scientific, Waltham, MA, USA) was added to both samples. The prepared samples were incubated at 37 °C for 30 min. After incubation, fluorescence was measured on a Synergy 4 spectrophotometer (BioTek, Winooski, VT, USA) at an excitation wavelength of 488 nm and an emission wavelength of 525 nm.
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