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11 protocols using scepter 2.0 automated cell counter

1

Culturing and Isolating Cell Lines

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To obtain cultured cells, human lymphoma cell line Daudi (JCRB9071) and Large T-transformed human embryonic kidney cell line HEK293T (RIKEN BRC2202) are cultured in D-MEM medium (Wako, 044–29765) supplemented with 10% FBS, GlutaMAX (Gibco, 25050–061), Pen/Strep (Gibco, 15140–122) or RPMI-1640 medium (Wako, 189–02025) supplemented with 10% FBS, respectively, in a humidified air condition containing 5% CO2 at 37°C. 10 μL of each con A-conjugated magnetic beads are mixed with mouse testicular cells (4×105 cells), Daudi (5×105 cells), or HEK293T (2×105 cells), respectively, and incubated for 30 min at RT. Cells bound to con A-conjugated beads are captured with a magnetic stand (FG-SSMAG2, FastGene), and numbers of con A beads-unbound cells in the supernatant are counted using a Scepter 2.0 automated cell counter (Merck) and 60 μL sensor (Fig 1C).
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2

Cell Growth Inhibition Quantification

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Inhibition of tumor cell growth was analyzed by quantitatively determining cell count using Scepter 2.0 automated cell counter (EMD Millipore). The relative number of cells at the end of treatment was expressed as percentage of untreated control.
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3

Automated Cell Growth Inhibition Analysis

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Inhibition of cell growth was analyzed by quantitatively determining cell count using a Scepter 2.0 automated cell counter (EMD Millipore). Cell volume measurements were also collected. The relative number of cells at the end of treatment was expressed as a percentage of untreated control cells. The combination index (CI) for quantification of the interaction between TTFields and paclitaxel was calculated as described18 with a correction to the sigmoidal shape of the A2780 response curve to the drug.
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4

Quantification of Viable Tumor Cells

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Inhibition of tumor cell growth was analyzed by quantification of cell numbers using Scepter 2.0 automated cell counter (EMD Millipore Billerica, Massachusetts, USA). The relative number of viable cells at the end of treatment was calculated as percentage of the untreated control.
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5

Cell Density Monitoring via Automated Counting

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For each MEF cell lines, cultures at 80–90% confluency were seeded in 6-well plates (CELLSTAR, Greiner Bio-One) at ∼6 × 104 cells per well in 1.5 mL (∼6 × 103 cell.cm−2) and incubated at 37°C and 5% CO2. At each time point, culture medium was removed, cells were washed twice with phosphate buffer saline (PBS), detached with 0.5 mL Trypsin-EDTA (Gibco™, cat.no. 25200056) and resuspended in 1 mL culture medium (1.5 mL final cell suspension). Cell concentration and volume were measured directly after the sampling by diluting cell suspension four times in PBS and using Scepter™ 2.0 Automated Cell Counter with 60 μm sensors (Merck Millipore). Both total and viable cell count and volume were recorded.47 The whole experiment was repeated three times with two technical replicates.
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6

Cell Number Estimation Protocol

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The concentration of cells in each sample (cells/ml) was estimated by counting cell number on a Scepter 2.0 Automated Cell Counter with 40 μM Scepter sensors (EMD Millipore; PHCC20040) in order to equalize cell numbers between biological replicates and between treatment groups prior to protein extraction. For cell population and growth analyses, initial cell counts (cells/mL) were determined manually using a hemocytometer and subsequently verified by sample analysis on the Scepter 2.0 Automated Cell Counter.
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7

Cell Culture and Characterization of Cancer Lines

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The MCF7 (ATCC, HTB-22), U87MG (ATCC, HTB-14), A549 (ATCC, CCL-185), and Caki-1 (ATCC, HTB-46) cell lines were obtained from American Type Culture Collection (ATCC, Manassas, VA, USA), and the MKN45 (JCRB Cell Bank, JCRB0254) cell line was purchased from the Japanese Collection of Research Bioresources Cell Bank (JCRB Cell Bank, Osaka, Japan). All cell lines were tested for mycoplasma, cross-contamination, and genetic fingerprints. U87MG were cultured in Eagle’s Minimum Essential Medium (EMEM; ATCC, 30-2003, Manassas, VA, USA) containing 10% (v/v) fetal bovine serum (FBS; Gibco, 26140079, Carlsbad, CA, USA) and 1% (v/v) penicillin/streptomycin (Gibco, 15140122, Carlsbad, CA, USA). MCF7, MKN45, A549, and Caki1 were cultured in Roswell Park Memorial Institute (RPMI) 1640 medium (Gibco, 11875093, Carlsbad, CA, USA) containing 10% (v/v) FBS (Gibco, 26140079, Carlsbad, CA, USA) and 1% (v/v) penicillin/streptomycin (Gibco, 15140122, Carlsbad, CA, USA). All cells were cultured according to the manufacturer's manual and had been passaged for fewer than three months after thawing. Cell counting was performed with the Scepter™ 2.0 automated cell counter (Millipore, Billerica, MA, USA) and c-Met expression was confirmed by Western blot using cell lysates.
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8

Microalgal Growth and Morphometric Characterization

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Microalgal growth, diameter, and volume were measured using a Scepter™ 2.0 Automated Cell Counter (Millipore, Berlington, MA, USA) every day of exposure. Briefly, 20 µL of cell culture was added to 2 mL of Coulter Isoton II diluent. The diatom concentration was expressed as the number of cells (105)/mL of the medium, while the diameter and volume were expressed in µm and picoliters (pL), respectively. In addition, growth rates were calculated according to the following equation: µ=ln (N1/N0)/(t1t0)
where N1 and N0 represent cell concentrations at t1 and t0 [27 ].
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9

Bisphenol Exposure in Phaeodactylum tricornutum

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P. tricornutum was purchased from the Culture Collection of Algae at Goettingen University (SAG) and was grown in the F/2 medium [26 ]. The stock culture was acclimated to the experimental conditions in a culture chamber at 16 °C, a light intensity of 40.5 µmol photons m−2s−1, and a photoperiod of 12:12 light/dark. The stock solutions (1 mg/L) of BPAF and BPF were made in methanol, while the BPS was dissolved in distilled water. Stocks of microalgal cultures were inoculated in Erlenmeyer flasks containing 200 mL of F/2 medium and exposed in triplicate to the bisphenols BPAF, BPF, and BPS, as well as to their mixture. A concentration of 300 ng/L of each bisphenol or 100 ng/L of each of them in the mixture treatment was adopted. In addition, a control plus methanol was tested. Cells from the stock culture (inoculum) were added to obtain an initial concentration of 5 × 105 cells/mL. The cell concentration was measured through a Scepter™ 2.0 Automated Cell Counter (Millipore, Berlington, MA, USA); the data had previously been validated using a Neubauer hemocytometer through a light microscope (Leica, Wetzlar, Germany). All the biochemical analyses were carried out in two different growth phases: exponential and at the beginning of the stationary phase, corresponding to 5 and 9 days of exposure, respectively.
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10

Bone Marrow Cell Transplantation in Stroke

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Harvesting and transplantation BM cells were harvested in RPMI medium (Gibco, Life Technologies), and approximately 107 cells were injected into the tail vein of recipient mice 30 min after MCAo [10 (link)]. Cell labelling A Vybrant® CFDA SE Cell (CFSE) Tracer Kit (V12883, Invitrogen) was used for cell labeling and visualization in situ or by flow cytometry. Characterization BM cells harvested from IL-1Ra-Tg and LM mice (n = 5/group) were analyzed with regard to cell numbers and cell size using the Scepter 2.0 automated Cell Counter from Millipore. To assure compatibility with the Scepter correlation range (50 × 105–1.5 × 106 cells/ml), 10 µl of BM cell suspension was first counted using a Bürker-Türk counting chamber. Next, 100 µl of a BM cell suspension from IL-1Ra-Tg and LM mice were counted using the Scepter automated cell counter employing 40-μm Scepter sensors (Millipore). Histograms and overlays were computed utilizing the Scepter™ 2.0 Cell Counter and Software Pro system.
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