The largest database of trusted experimental protocols

Axiovert 100 inverted microscope

Manufactured by Zeiss
Sourced in Germany, United States

The Axiovert 100 is an inverted microscope designed for a range of applications. It features a stable mechanical construction and a vibration-isolated observation platform. The microscope is equipped with plan-achromatic objectives and provides bright-field, phase-contrast, and simple polarization observation techniques.

Automatically generated - may contain errors

21 protocols using axiovert 100 inverted microscope

1

Isolation and Cultivation of Gymnodinium catenatum

Check if the same lab product or an alternative is used in the 5 most similar protocols
Two strains from Bahía de La Paz (BAPAZ-7 and BAPAZ-5) and two strains from Bahía de Mazatlán (BAMAZ-2 and GCMQ-4) were used in this study (Figure 6). Table 3 shows the isolation information for each strain. Strain GCMQ-4 (Bahía de Mazatlán, Sinaloa) was acquired from the marine dinoflagellate collection (CODIMAR) of CIBNOR in La Paz, Mexico. The isolation information of the strains in this collection can be found at https://www.cibnor.gob.mx/investigacion/colecciones-biologicas/codimar accessed on 13 July 2022.
Vegetative cells were collected by vertical and superficial trawls with a plankton net (20 μm mesh). The concentrated phytoplankton collected in each trawl was passed through a 60 μm mesh net to remove larger organisms. The filtrate was inoculated in 250 mL containers with f/2 culture medium [106 (link)] that had been modified by adding selenium (10−8 M H2SeO3) and reducing the copper concentration (10−8 M CuSO4) [107 (link)]. In the laboratory, vegetative cells of G. catenatum (Supplementary Material Figure S2) were isolated by single cell isolation with a capillary tube under an Axiovert 100 inverted microscope (Carl Zeiss, Oberkochen, Germany) and individually transferred to a 24-cell plate containing the modified f/2 medium. Cells were incubated at a temperature of 21.0 ± 1.0 °C, light intensity of 120 μmol photon m−2 s−1, and a 12:12 h light–dark cycle.
+ Open protocol
+ Expand
2

Visualizing Receptor Internalization in CHO-K1 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
CHO-K1 cells stably expressing receptors of interest were transiently transfected with β-arrestin2-GFP using Lipofectamine 2000 (Invitrogen). Twenty-four hours post-transfection, cells were plated on 35-mm glass bottom plates. On the following day, cells were starved for at least 2 h in serum-free medium prior to stimulation. After stimulation, cells were fixed with 5% formaldehyde, and diluted in phosphate-buffered saline containing calcium and magnesium before analysis by confocal microscopy using an Axiovert 100 inverted microscope equipped with a C-Apochromat 63X/1.2 oil immersion objective (Zeiss). The 488-nm excitation beam of an Argon-Krypton laser and a 500–550-nm band-pass emission filter were used. The beam power was kept below 10% of maximal power to reduce photobleaching and phototoxicity.
+ Open protocol
+ Expand
3

EMT Markers Quantification in MCF7 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MCF7 cells (2.5 × 105) were seeded on 22 mm-Aclar plastic coverslips (Pro-Plastics Inc., Linden, NJ, USA) previously coated with rat-tail collagen. After treatment with NETs (500 ng/mL) for 16 h, cells were fixed with 4% paraformaldehyde diluted in PBS (pH 7.4), permeabilized with PBS containing 0.5% Triton X-100 and incubated with primary antibodies against: β-catenin (1:50, #C-2206, Sigma Chemical Co, Saint Louis, MO, USA), E-cadherin (1:50, #04-1103, Millipore, Burlington, MA, USA), fibronectin (1:50, #F-6140, Sigma Chemical Co, Saint Louis, MO, USA) or N-cadherin (1:50, #C-3865, Sigma Chemical Co, Saint Louis, MO, USA) for 1 h at 37 °C. Cells were washed and incubated for 1 h at 37 °C with secondary antibodies Alexa Fluor 546 or Alexa Fluor 488 (1:100), all purchased from Thermo Fischer Scientific. Nuclei were labeled with 0.1 μg/mL DAPI (Thermo Fisher Scientific) or NucSpot (1:500, Biotium, Hayward, CA, USA) for 5 min. Slides were mounted in ProLong Gold antifade reagent (Molecular Probes, Eugene, OR, USA) and examined in an Axiovert 100 inverted microscope (Carl Zeiss, Oberkochen, Germany). Images were acquired with an Olympus DP71 digital camera (Olympus, Shinjuku City, Japan). The overall fluorescence intensity was quantified using the ImageJ software (NIH, Bethesda, MD, USA), and results were expressed as a percentage, considering untreated cells as 100%.
+ Open protocol
+ Expand
4

Capillary Density Quantification by Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fragments of AT were fixed in 4% formaldehyde, washed and stained with Rhodamine-Lectin UEA-1 (Vector Labs, Burlingame, CA, USA) for 1 h at room temperature and then mounted between 1.5 mm coverslips sealed with Pro-Long Gold Antifade Reagent (Life Technologies, Grand Island, NY, USA). A Zeiss (Peabody, MA, USA) Axiovert 100 inverted microscope with a ×10 objective and AxioCam HRm camera was used to acquire nine Z-plane image stacks at 10 μm intervals. The individual collecting the images was unaware of the group they corresponded to. Quantification of capillary density was determined as described in ESM Fig. 2.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Brain Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemical analysis, tissue sections were de-paraffinized, rehydrated and subjected to high temperature antigen retrieval in 10 mM citrate buffer (pH 6.0). The following primary antibodies were used: rabbit monoclonal anti-Ki67 (clone SP6, Lab Vision, 1:100) rabbit polyclonal anti-GFAP (Novus Biologicals, 1:100), anti-nestin (Millipore, 1:100). These primary antibodies were applied for 2 h in blocking buffer (2.5% BSA, 5% goat serum, 0.3% Triton X-100 in PBS), followed by species-appropriate secondary Alexa Fluor 488 dye conjugated antibodies (Amersham) or Vectastain ABC kit and DAB reagents (Vector Laboratories). Fluorescence antibody-labeled slides were mounted in DAKO fluorescent mounting medium containing 1 μg ml−1 Hoechst counterstain. HRP-conjugated secondary antibodies were visualized by DAB staining (Vector Laboratories). Apoptotic cells were detected with ApopTag Detection kit (Chemicon International). Images were obtained with an Axiovert S100 TV inverted fluorescence microscope (Zeiss) and Open Lab 3.5.1 software, or with an Axiovert 100 inverted microscope (Zeiss) equipped with a Hamamatsu Orca digital camera.
+ Open protocol
+ Expand
6

Fura-2 Calcium Imaging of Live Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The imaging system consisted of an Axiovert 100 inverted microscope (Zeiss, Oberkochen, Germany), Polychrome V monochromator (TILL Photonics, Graefelfing, Germany), and a SensiCam cooled charge-coupled device (PCO Systems, Kelheim, Germany). Fluorescent imaging measurements were acquired with Imaging Workbench 5 (INDEC Biosystems, Santa Clara, CA, USA). Cells were incubated for 30 min with 2.5 μM Fura-2 acetoxymethyl ester (AM; TEF-Labs, Austin, TX, USA) in Ringer's solution with 0.1% BSA. After dye loading, the cells were washed in Ringer's solution, and cover slides were mounted into a chamber that allowed perfusion. Fura-2 was excited at 340 nm and 380 nm, and imaged with a 510-nm long-pass filter.12 (link) All results shown are the means of at least three independent experiments, with averaged responses of 30 cells in each experiment.
+ Open protocol
+ Expand
7

Measuring Calcium Signaling in HLMVECs

Check if the same lab product or an alternative is used in the 5 most similar protocols
HLMVECs grown on glass-bottomed dishes (Becton Dickinson) were loaded with fura-2 AM (3 μM, Life Technologies) for 20 min at 37°C in culture medium without supplements. The medium was then replaced with medium comprising: 150 mM NaCl, 4 mM KCl, 1 mM MgCl2, 5.6 mM glucose, and 25 mM HEPES (pH 7.4), and, after ∼10 min, cells were used for experiments at 25°C. Fura-2 fluorescence was excited at 340 and 380 nm and collected at 510 ± 80 nm using an Axiovert 100 inverted microscope (Carl Zeiss) equipped with Plan-Apo 60× with the numerical aperture (NA) 1.4 oil immersion objective, Lambda DG-4 switcher illumination system (Sutter Instruments), AxioCom Hsm camera (Zeiss), fura-2 filter set (Chroma), and AxioVision Physiology Acquisition module. Images were collected at 2-s intervals. Fluorescence ratios (F340/F380) were calculated within a circular region of interest (radius 3 μm) for each cell after subtraction of intracellular background fluorescence, determined by quenching fura-2 fluorescence by addition of 3 μM ionomycin with 5 mM MnCl2. [Ca2+]c was calculated from F340/F380 ratios by reference to Ca2+ standard solutions (Life Technologies). Measurements of cytosolic IP3 concentrations are described in Supplemental Experimental Procedures.
+ Open protocol
+ Expand
8

Imaging-based Intracellular Ion Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
The imaging system consisted of an Axiovert 100 inverted microscope (Zeiss, Oberkochen, Germany), Polychrome II monochromator (TILL Photonics, Planegg, Germany), and a SensiCam cooled charge-coupled device (PCO, Kelheim, Germany). Fluorescent imaging measurements were acquired with the Imaging Workbench 6 software (Axon Instruments, Foster City, CA, USA) and analyzed using Microsoft Excel, Kaleidagraph and Matlab.
Cytoplasmic Zn2+ transport was determined in cells loaded with 1 µM Fluozin-3AM. To verify that the fluorescence changes were related to intracellular ions, the cell-permeable heavy metal chelator N,N,N’,N’-tetrakis-(2-pyridylmethyl)-ethylenediamine (TPEN; 20 µM) was used.
Cytoplasmic pH changes, indicative of H+ transport, were determined in cells loaded with 1 µM BCECF-AM, a pH sensitive dye. Values of intracellular pH were calibrated using high K+ Ringer’s solution set to pH values of 6–8 in the presence of Nigericin [56 (link)].
Intracellular acidification was triggered using the ammonium prepulse paradigm [42 (link)]. Cells were superfused with Ringer’s solution containing NH4Cl (30 mM, replacing the equivalent 30 mM NaCl), which was subsequently replaced with NH4Cl-free solution, thus triggering intracellular acidification.
+ Open protocol
+ Expand
9

Immunofluorescent Localization of KIBRA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed 24 hours following microinjection with 4% paraformaldehyde with 30% sucrose in PBS for 30 min and washed with PBS. Fixed cells were permeabilized with 0.1% Triton X-100 with 30% sucrose in PBS for 10 min, and washed briefly with PBS. Free aldehydes were quenched with 50 mM ammonium chloride for 10–15 min followed by brief PBS wash. To block nonspecific antibody binding, cells were incubated with 10% normal goat serum (Sigma) plus 0.5% Triton X-1000 in PBS for 30 min. Cells were incubated with KIBRA C-term antibody in blocking solution (1:1000) for 1 hour, followed by 4 PBS washes of 5–10 min. Cells were then incubated in the dark with Alexa Fluor 647-conjugated goat anti-rabbit antibody in blocking solution (1:200, Invitrogen) for 1 hour and washed as above. Images were captured by a LSM 710 (Zeiss) laser confocal scanning microscope equipped with an Axiovert 100 inverted microscope (Zeiss) and a 63×, NA 1.4 objective.
+ Open protocol
+ Expand
10

Measuring Calcium Dynamics in Islet Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Both isolated islets and dispersed islet cells were perifused at 37 °C at the flow rate of 0.5 ml/min. A Nikon Eclipse TE2000-E inverted microscope equipped with a confocal QLC100 spinning disk (Yokogawa) was used to measure changes in GCaMP6f fluorescence in α-cells within whole isolated islets. This system allows [Ca2+]c measurements in each α-cell of the islet instead of a global fluorescence of the whole islet. For dispersed cells, a confocal system was not needed, and a Zeiss Axiovert 100 inverted microscope was used instead. For confocal imaging, the GCaMP6f probe was excited at 491 nm and emission fluorescence was recorded at 503–552 nm. For epifluorescence imaging, the GCaMP6f probe was excited at 485 nm and the emitted fluorescence was recorded at 510–560 nm. Images were acquired every 1–3 s with an EMCCD QuantEM 512SC or a sCMOS Prime 95B camera (Photometrics) using Metafluor software (Molecular Devices).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!