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43 protocols using bm0627

1

Protein Expression Analysis in Pulmonary Artery

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Protein concentration was measured after protein extraction from pulmonary artery tissue and primary cultured PASMCs. Extracted proteins were detected by Western blot analysis Primary antibody was purchased from Cell Signaling Technology (CST), USA. Optical density analysis was performed using Image J 1.43 (National Institutes of Health). Primary antibodies against eIF2α (1:1000 dilution, CST, Danvers, MA, USA, #5324s) were purchased from CST. Primary antibodies against p-eIF2α (1:1000 dilution, CST, #3398s) were purchased from CST, Primary antibodies against LC3B (1:1000 dilution, CST, #12741s) were obtained from CST, Primary antibodies against p62 (1:1000 dilution, CST, #88588) were purchased from CST. Primary antibody against β-actin (BM0627, 1:250) was purchased from Boster. Goat anti-rabbit IgG secondary antibody was purchased from Beyotime (A0408, 1:2000 dilution).
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2

Western Blot Analysis of HIF-1α in EPCs

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The proteins of EPCs were lysed in RIPA buffer (SW104, Sevenbio, Beijing, China) containing a protease inhibitor cocktail and then centrifuged for 15 min at 12,000× g at 4 °C. Proteins (20 μg per lane) were separated through 10% sodium dodecyl sulfate polyacrylaminde gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene fluoride (PVDF) membranes (0.45 μm; Millipore, USA) for analysis. After being blocked with 5% non-fat milk, the membranes were incubated with primary antibodies HIF-1α (ab179483, Abcam, Cambridge, UK; 1:1000) and β-actin (BM0627, Boster, Wuhan, China; 1:2000) overnight at 4 °C and then incubated for 1 h at 37 °C with secondary antibodies (G1213, Servicebio, Wuhan, China; 1:5000). The proteins were visualized using a Bio-Rad scanner after preparation with an ECL substrate kit (32106, Thermo Pierce, Waltham, MA, USA).
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3

Renal Protein Expression Analysis

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Renal arteries were homogenized in RIPA buffer (Beyotime Biotechnology, China) to obtain whole cell lysates and centrifuged to isolate protein. Ten micrograms of protein were run in an SDS‐polyacrylamide gel electrophoresis and blotted onto a PVDF membrane. After blocking with 5% non‐fat milk, membranes were incubated with the following primary antibodies: CGRP polyclonal antibody (1:8000; Sigma‐Aldrich, USA; Catalog C8198), β‐NGF (1:1000; R&D Systems Inc., USA; Catalog AF‐556‐NA), GAP‐43 (1:500; BIOSS, China; Catalog BS‐0154R), or β‐actin (1:1000; Boster, China; Catalog BM0627; Clone AC‐15). After incubating with anti‐rabbit HRP‐conjugated IgG (1:2500, Boster, China) for 2 h at room temperature, immunoreactive bands were then visualized by chemiluminescence reagents (ECL; 3‐Biologic, Shanghai, China). The band intensity was quantified using Image J analysis software in a blinded manner, and all bands were normalized to corresponding β‐actin bands.
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4

Western Blot Analysis of Circadian Proteins

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Total proteins were extracted from the cells and separated by SDS-polyacrylamide gels, and transferred to polyvinylidene difluoride membrane. The membranes were blocked with 3% bovine serum albumin. Target proteins were detected by incubating the membranes with primary antibodies and the horseradish peroxidase-conjugated secondary antibody (Sigma) followed by the Pierce ECL Western blotting substrate (Thermo Fisher). The following primary antibodies were used for CRY1, sc-393466 (Santa Cruz); for CREB and p-CREB, #9197 and #9198 (Cell Signaling Technology); for ERK1/2 and p-ERK1/2, #4695 and #4370 (Cell Signaling Technology); for β-actin, BM0627 (Boster). Each experiment was repeated at least 3 times.
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5

Western Blot Analysis of mTOR Pathway

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Three pairs ccRCC and adjacent tissues were chosen for WB analysis (Yuan et al., 2020 (link)). Membranes were incubated with the desired primary antibodies: mTOR (1:2,000, rabbit, ab32028; Abcam, Cambridge, MA, USA), p-mTOR (Ser2448, 1:2,000, rabbit, ab109268; Abcam, Cambridge, MA, USA), anti-Actin (1:1,000, mouse, BM0627; BOSTER, Beijing, China), the corresponding secondary antibodies (SA00001-2 & SA00001-1; Proteintech, Wuhan, China) were diluted to 1:5,000, and enhanced chemiluminescence (Amersham Imager 600; Marlborough, MA, USA) was used for immunodetection as previously described (Yuan et al., 2020 (link)).
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Western Blot Analysis of Protein Targets

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After protein extraction and cell lysis, standard WB operation was performed. In brief, tissue total proteins (40 mg) were loaded on 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred onto a nitrocellulose membrane. The membrane was blocked using 5% skim milk for 2 h, then incubated overnight with primary antibodies at 4°C. The membrane was then incubated with a secondary antibody, such as anti-RhoA (1:5,000 dilution, Abcam, ab187027), anti-EMC10 (1:500 dilution, Solarbio, K009317P), anti-SEMA3F (1:2,000 dilution, Affinity, DF8611), anti-VIPR1 (1:1,000 dilution, Affinity, DF5172), anti-PAQR8 (1:1,000 dilution, Novus, NBP2-92893), anti-GGA2 (1:1,000 dilution, Proteintech, 10356-1-AP), and β-actin (1:1,000 dilution, Boster, BM0627) as an internal control. The band density was measured by BandScan 5.0. Each protein measurement was taken in three replicates.
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7

Titanium Specimen Protein Expression Analysis

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The protein expressions of runt-related transcription factor 2 (Runx2) and osteopontin (OPN) on four different titanium specimens were analyzed by western blotting. After culturing cells (2 × 105 cells per well) on different specimens in 6-well plates for 7 and 14 days, the cells were rinsed with cold PBS and protein samples were harvested by lysis in RIPA buffer. The BCA protein assay kit (Key-GEN BioTECH, Nanjing, China) was used to determine total protein concentration. Protein extract samples (20 μg) were separated by electrophoresis and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% skim milk for 1 hour at room temperature and then incubated with different primary antibodies against Runx2 (12556, CST, Beverly, MA, USA), OPN (ab8448, Abcam, USA), and β-actin (BM0627, Boster, Wuhan, China) overnight at 4 °C. Subsequently, the membranes were incubated with secondary antibodies (ZB-2301, goat anti-rabbit IgG; ZSGB-BIO, Beijing, China; AP124P, goat anti-mouse IgG; Millipore, USA) for 2 hours. Finally, the membranes were visualized via ECL western blot kit (Millipore, USA). The protein expressions of Runx2 and OPN were evaluated relative to that of β-actin as the internal control. The experiments were performed in triplicate.
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8

Osteogenic Potential on Titanium Surfaces

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Protein expressions of Runx2 and OCN of cells on titanium surfaces were examined by Western blotting. After culturing in 6-well plates on different samples pre-adsorbed with 0, 50, 100 and 200 μg ml−1 LDL for 3, 7 and 14 days, MC3T3-E1 cells (2 × 105 cells per well) were rinsed with cold PBS and protein samples were harvested by lysis in radio-immunoprecipitation (RIPA) buffer. The concentration of extracted total proteins was determined using the BCA protein assay kit (Key-GEN BioTECH, Nanjing, China). Protein samples (20 μg) were separated by electrophoresis and then transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk for 1 h at room temperature, the membranes were incubated with primary antibodies against Runx2 (12556; CST, Beverly, MA, USA), OCN (ab93876; Abcam, Cambridge, Ma, USA), and β-actin (BM0627, Boster, Wuhan, China) at 4 °C overnight. On the next day, the membranes were incubated with corresponding secondary antibodies (ZB-2301, Goat anti-Rabbit IgG, ZSGB-BIO, Beijing, China; AP124P, Goat anti-Mouse IgG, Millipore, USA) at room temperature for 2 h. After that, the membranes were visualized using the ECL Western Blot Kit (Millipore, USA). The protein expressions were determined relative to that of β-actin. The gray values of protein levels were quantified using the Photoshop software.
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9

Western Blot Analysis of Inflammatory Markers

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Standard WB procedures were carried out with those antibodies: rabbit anti-TNF alpha polyclonal antibody (bs-2081R, bioss, Beijing, China), IL10 antibody (GTX632359, Gene Tex, CA, USA), rabbit anti-occludin polyclonal antibody (bioss, bs-10011R), anti-NF-κB (CST, mAb #8242, Danvers, MA, USA), TLR4 antibody (NB100-56566SS, Novus, CO, USA), mouse anti-β-actin (BM0627, boster, Wuhan, China).
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10

Western Blot Analysis of Adipose and Energy Metabolism

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The standard procedure for Western blotting was performed using the following antibodies: anti-adipose triglyceride lipase antibody (abcam, ab109251, Cambridge, MA, USA), anti-AMPKα antibody (CST, mAb #2603, Danvers, MA, USA), anti-phospho-AMPKα antibody (CST, mAb #2535), anti-SREBP1 antibody (Novus Biologicals, NB-100-2215SS, Littleton, CO, USA), anti-β-actin antibody (Boster, BM0627, Wuhan, China). Western blot analysis was done as described elsewhere [43 (link)]. Briefly, whole-tissue and cell lysates were prepared, and protein concentrations were measured using the bicinchoninic acid (BCA) method. Proteins were separated on the Bio-Rad Mini-PROTEAN Tetra gel system (BioRad, Hercules, CA, USA). The proteins were transferred to PVDF membranes and probed. Equal loading of the protein was confirmed by β-actin.
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