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30 protocols using pk 4000

1

Histological Analysis of Muscle Tissue

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Following the last imaging sessions on day 12, mice were euthanized by isoflurane overdose and then perfusion-fixed with 4% paraformaldehyde. The right limb muscle of mice was excised and paraffin-embedded. Embedded tissues were sectioned (5 μm in thickness) every 400 μm to ensure entire sampling of the tissue. These sections were stained with hematoxylin and eosin for general tissue morphology, PPB and nuclear fast red counterstain to identify the presence of ferumoxytol, or F4/80 immunohistochemical staining to identify macrophages. For F4/80 staining, sections underwent antigen retrieval in sodium citrate buffer, permeabilized using 0.4% Triton X-100 (Sigma-Aldrich, Oakville, Ontario, Canada), followed by overnight incubation in rat antimouse F4/80 primary antibody [1:100 dilution] (ab16911, Abcam). The next day, sections were incubated with biotinylated goat antirat IgG antibody [1:300 dilution] (BA-9401, Vector Laboratories) and then processed with ABC solution (PK4000, Vector Laboratories, Burlington, Ontario, Canada). Lastly, the slides were incubated in 3,3′-diaminobenzidine tetrahydrochloride (DAB) substrate solution (SK-4100, Vector Laboratories) and counterstained with hematoxylin. Histological images were acquired on the EVOS Imaging System (M7000, Thermo Fischer Scientific).
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2

Chondrocyte Proliferation and Hypertrophy Assay

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Proliferation and hypertrophy were detected with Ki67 and ColX immunohistochemistry staining respectively. Briefly, slides were dewaxed, dehydrated and hydrated before blocking cellular peroxidase activity with H2O2. For Ki67, an antigen retrieval step (10 m Sodium citrate pH6 + 0,05% Tween-20) was performed. Primary antibodies targeting Ki67 (Abcam ab16667) or ColX (Cosmo Bio LS-LB-0092) were incubated overnight in blocking buffer (TBS with 5% goat serum). The next day, the biotynilated secondary antibody (Abcam ab6720) was incubated for 30 min. An ABC kit (Vectastain PK4000) was added to amplify the biotin-streptavidin reaction and provide the detection by HRP and the DAB substrate (DAKO K346711). Slides were counterstained with Haematoxylin and mounted with Pertex.
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3

Immunohistochemical Analysis of Ki-67 Expression

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Tissue sections (3 µm) obtained on glass slides were deparaffinized, washed with ethanol and water, and soaked in PBS. The sections were autoclaved with 0.01 M citrate buffer (pH 6.0) for 15 min (121°C). The sections were then washed with PBS and incubated with the rabbit polyclonal anti-Ki-67 antibody (1:50; E0468; Dako, Glostrup, Denmark) for 30 min at room temperature. After washing with PBS, the sections were incubated with rat anti-IgG antibody (1:100; sc-372; Vector Laboratories, Inc., Burlingame, CA, USA) for 30 min at room temperature. The slides were washed with PBS and stained using the ABC method (PK-4000; Vector Laboratories, Inc.) for 30 min. Cell counts in 25 random fields were calculated at a magnification, ×400 by using five mice from each group.
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4

Immunohistochemical Analysis of FOXH1 and p-S6K1

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Tissues were fixed in 10% (v/v) formaldehyde in PBS and embedded in paraffin. 5 μm sections were made and treated with boiling citrate buffer (pH 6.0) for 30 mins to complete antigen retrieval. After incubation with 3% peroxidase and 10% goat serum blocking buffer, the slides were incubated with 1:100 diluted anti-FOXH1 (ab189960, Abcam) or anti-p-S6K1 (9234, CST) primary antibody at 4° C for at least 16 hours. Then the slides were incubated with biotin-labeled secondary antibody for another 30 min, and followed by 30 min streptavidin incubation (PK-4000, Vectastain, USA.) The FOXH1 signal was determined by DAB staining.
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5

Immunohistochemical Staining of Tissue Sections

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Antigen retrieval was performed on rehydrated tissue sections in boiling citrate buffer (pH 6.0) for 30 min. After being treated with 3% H2O2 and blocking buffer (5% normal goat serum in PBS), tissue sections were incubated with p-STAT3 (Y705) (9131, Cell signaling), Ki67 (BD pharmingen) or CD133 (Proteintech) at 4 °C overnight. Then biotin-labeled secondary antibody was added for another 30 min, followed by 30 min incubation of streptavidin-horseradish peroxidase (HRP) (PK-4000, Vectastain, Burlingame, CA) and signals were visualized by peroxidase substrate DAB kit (SK-4100, Vectastain, Burlingame, CA).
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6

Immunohistochemical Analysis of Aquaporins

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The skin was placed in a 30% sucrose solution for cryoprotection. After 3 days in sucrose, the skin was frozen in liquid nitrogen. The tissue was sliced into sections and mounted on slides for staining. Slides were incubated at 4°C overnight with primary antibodies to AQP5 (1 : 1000), UT-A1 (1 : 1500), and UT-B1 (1 : 2500). Visualization was achieved using the standard ABC kit (Vectastain PK-4000) according to the manufacturer's instructions. Preincubation control experiments have been addressed to confirm that the antibodies used really are detecting the proteins of interest.
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7

Immunohistochemical Analysis of Pancreatic Markers

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Western blotting, immunostainings and β-galactosidase were performed as previously described[8 (link)]. Antibodies for indicated antigens include beta-catenin 1:200 in PBS (AB6302, Abcam), insulin 1:800 in PBS (sc-9168, Santa cruz), glucagon 1:1200 in PBS (PA039-5P, BioGenex), e-cadherin 1:500 in MOM diluent (610182, BD Bioscience), beta-galactosidase 1:1000 in PBS (8559762, MP Biomedical), and amylase 1:5000 in Tris Buffered saline (Sc-46657, Santa Cruz). Reagents: DAPI (5mg/mL) 1:4000 in PBS (D1306, Thermofisher) and 5-Bromo-4-chloro-3-indolyl β-D-galactopyranoside 1mg/mL in PBS (Sigma-Aldrich, B4252-100MG) and mouse on mouse (MOM) basic kit (BMK-2202, Vector Laboratories) according to manufacturer’s descriptions, ABC basic kit 1:25 (PK-4000, Vector Laboratories) and 3–3’-Diaminobenzene (DAB) (SK-4100, Vector Laboratories) in the presence of 0.0005% (v/v) hydrogen peroxide (H2O2).
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8

Immunohistochemical Analysis of Cell Proliferation and Apoptosis

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Fixed samples were embedded in paraffin and sectioned in a routine manner. The sections were subjected to hematoxylin-eosin (HE), Ki-67 and terminal dUTP nick-end labeling (TUNEL) staining.
For Ki-67 staining, tissue sections (3 μm) on glass slides were deparaffinized, washed with ethanol and water, and soaked in phosphate-buffered saline (PBS). The sections were autoclaved with 0.01 M citrate buffer (pH 6.0) for 15 min (121°C). The sections were then washed with PBS and incubated with rabbit polyclonal anti-Ki-67 antibody (1:50; E0468, Dako, Glostrup, Denmark) for 30 min at room temperature. After washing with PBS, the sections were incubated with rat anti-IgG antibody (1:100; sc-372; Vector Laboratories, Inc., Burlingame, CA, USA) for 30 min at room temperature. The slides were washed with PBS and stained using the ABC method (PK-4000; Vector Laboratories, Inc.) for 30 min.
For TUNEL staining, tissue sections (3 μm) on glass slides were deparaffinized, washed with ethanol and water, and soaked in diluted water. TUNEL staining was performed using the In situ Apoptosis Detection kit (Takara Bio, Inc., Shiga, Japan) according to the manufacturer’s instructions. Ten high-power fields were randomly selected and the positive cells were counted.
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9

Immunohistochemical Detection of α-Synuclein

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Free-floating immunohistochemistry (IHC) was performed using the streptavidin-biotin-peroxidase method as previously described [49 (link),78 (link)]. In brief, sections were quenched in a solution containing 3% hydrogen peroxide and 10% methanol in distilled water to eliminate endogenous peroxidase activity. Nonspecific antibody binding was blocked by incubation in a solution containing 3% normal goat serum in Tris-buffered saline (TBS) with 0.2% Triton X-100 at room temperature for 1 h. The primary antibody (mouse antihuman-α-synuclein, 1:10,000, 36-008, Merck Millipore, Cork, Ireland) was diluted in 1% serum in TBS with 0.2% Triton X-100 and allowed to incubate with the sections overnight. Sections were then incubated with the biotinylated secondary antibody (goat antirabbit, 1:200, 111-065-144, Jackson ImmunoResearch, Cambridgeshire, UK) with 1% serum for 3 h. A streptavidin-biotin-horseradish peroxidase solution (Vector PK-4000) was subsequently added to sections and allowed to incubate for 2 h. Development of the staining was performed using a 0.5% diaminobenzidine tetrahydrochloride (DAB) (Sigma D5637) solution in TBS containing 0.3 µL/mL of hydrogen peroxide. Sections were mounted onto gelatine-coated slides, dehydrated in an ascending series of alcohols, cleared in xylene and coverslipped using DPX mountant.
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10

Immunohistochemical Tissue Staining Protocol

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Sections were washed three times in PBS for 5 min, quenched in 0.3% H2O2 for 30 min, washed in 0.05% Triton X-100 in 1× PBS (PBS-T), then blocked in 3% normal horse serum and 2% BSA (Sigma-Aldrich) for 60 min at room temperature, followed by incubation in primary antibody at 4 °C, except for GDNF which was at room temperature (Supplementary Table 3). Sections were then washed with 0.2% PBS-T and placed in appropriate biotinylated secondary antibodies (Vector, BA-9500 or BA-1100, 1:200) for 2 h at room temperature. After washing, sections were incubated in avidin–biotin complex (Vector, PK-4000) for 45 min at room temperature and washed for 30 min in 1× PBS. A DAB kit (Vector, SK-4100) was used for chromogenic detection. For GDNF staining, samples were enhanced with nickel substrate coincubation. Sections were then washed in tap water and 1× PBS, mounted on slides and dehydrated in two washes each of 95% ethanol (EtOH), 100% EtOH and xylene. Images taken with Leica DM 2000 LED microscope using Leica ICC50 HD camera.
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