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Proteominer low abundance protein enrichment kit

Manufactured by Bio-Rad
Sourced in United States

The ProteoMiner Low Abundance Protein Enrichment Kit is a laboratory product designed to enrich low-abundance proteins from complex biological samples. It utilizes a combinatorial peptide ligand library to selectively capture and concentrate low-copy-number proteins, facilitating their detection and analysis.

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4 protocols using proteominer low abundance protein enrichment kit

1

Proteomic Analysis of Colorectal Cancer

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Azoxymethane (Sigma, United States), dextran sulfate sodium (36–50 kDa, MP Biomedicals, United States), phosphate-buffered saline (Hyclone, United States), PageRuler Plus Prestained Protein Ladder (ThermoFisher, United States), TMT® Mass Tagging Kits and Reagents (ThermoFisher, United States), dithiothreitol (Sigma, United States), iodoacetamide (Sigma, United States), sodium dodecyl sulfate (Sigma, United States), urea (Sigma, United States), pancreatin (Promega, China), ammonium bicarbonate (Sigma, United States), UltraPure water (ThermoFisher, United States), triethylammonium bicarbonate buffer (Sigma, United States), acetonitrile (ThermoFisher, United States), formic acid (ThermoFisher, United States), acetone (ThermoFisher, United States), ProteoMiner Low-Abundance Protein Enrichment Kit (Bio-Rad, United States), and trifluoroacetate (Sigma, United States) were used in this study.
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2

TMT-based Proteomics Workflow

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Reagents were as follows: TMT Labeling Kit (Thermo Inc.), ProteoMiner Low Abundance Protein Enrichment Kit (Bio-Rad Inc.), BCA Kit (Biyuntian Biotechnology Co., Ltd.), trypsin (Promega Inc.), Trifluoroacetic Acid (Sigma-Aldrich Inc.), formic acid (Fluka Inc.), iodoacetamide (Sigma Inc.), dithiothreitol (Sigma Inc.), urea (Sigma Inc.), triethylammonium hydrogen carbonate (Sigma Inc.), ultrapure water (Fisher Chemical Inc.), and 0.26 mm–0.28 mm monofilament nylon fishing line (2838–20A4 Beijing Xion Technology Co., Ltd.). Standard: Ligustrazine Hydrochloride (110817–201608), ferulic acid (110773–201614), and astragaloside IV (110781–201717) were purchased from China Food and Drug Control Research Institute. Rat angiotensinogen ELISA kit (ER0371) and catalase kit (ER0264) were purchased from Wuhan Fine Biotechnology Co., Ltd. Anti-catalase antibody (catalog number ab209211), anti-angiotensinogen antibody (catalog number ab213705), and Anti-beta Actin (catalog number ab8226) were purchased from Abcam company.
Instruments used were as follows: Ultrasonic Cell Breaker (Xinzhi Biotechnology Co., Ltd.), high-speed refrigerated centrifuge, Dynamica microplate reader (Bio-Rad Inc.), and Scientific Q Exactive, Scientific Q Exactive Plus, Scientific Orbitrap Fusion (Thermo Inc.). Column was Welch Vltimate XB-C18 (HS), 4.6 × 250 nm, 5 μm.
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3

Comprehensive Metabolomic and Transcriptomic Analysis

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Liquid chromatography–Mass spectrometry (LC-MS)-grade ultrapure water, LC-MS-grade acetonitrile, and LC-MS-grade formic acid were purchased from Thermo Fisher Chemical (Waltham, MA, USA). Acetone was purchased from Beijing Chemical Works Co., Ltd. (Beijing, China). ProteoMiner Low Abundance Protein Enrichment Kit was purchased from Bio-Rad (Hercules, CA, USA). LC-MS/MS analysis was performed by Novogene Co., Ltd. (Beijing, China). Aspartate aminotransferase (AST) enzyme-linked immunosorbent assay (ELISA) and alanine aminotransferase (ALT) ELISA kits were purchased from Shanghai Enzyme-linked Biotechnology Co., Ltd. (Shanghai, China). GSH and SOD Biochemical Assay Kit were purchased from Elabscience Biotechnology Co., Ltd. (Wuhan, China). Liquid chromatography–mass spectrometry (LC–MS)-grade water, acetonitrile (ACN), Methanol (MeOH), and formic acid (FA) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). LC–MS/MS analysis was performed by Novogene Co., Ltd. (Beijing, China). AG RNAex Pro Reagent, Evo M-MLV RT Mix Kit with gDNA Clean for Qpcr, and SYBR® Green Premix Pro Taq HS qPCR Kit were purchased from Accurate Biotechnology(Human)Co., Ltd. (Changsha, China).
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4

Proteomic Analysis of Nutmeg Bioactives

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Nutmeg seeds were purchased from Shenyang Medicinal Materials Market (Shenyang, China), the seeds were ground into fine powder and stored at 4 °C in a sealed plastic bag. Nutmeg powder was suspended in normal saline before each time use. MDA ELISA, MAO ELISA, Glutathione peroxidase (GSH-Px) ELISA, Glutathione S-transferase (GSTs) ELISA kits were purchased from Shanghai Enzyme-linked Biotechnology Co., Ltd. (Shanghai, China). Tandem Mass Tagging (TMT) Kits and Reagents was purchased from Thermo Fisher (Waltham, MA, USA), Bradford protein quantification kit was purchased from Beyotime (Shanghai, China). Dithiothreitol (DTT), triethyl ammonium bicarbonate buffer solution (TEAB), iodoacetamide (IAM), ammonia water and ammonium bicarbonate were purchased from Sigma (St. Louis, MO, USA). Sodium dodecyl sulfate (SDS) and urea were purchased from Sinopharm (Shanghai, China). Mass spectrometry grade pancreatin was purchased from Promega (Madison, WI, USA). Liquid chromatography-Mass spectrometry (LC-MS) grade ultrapure water, LC-MS grade acetonitrile and LC-MS grade formic acid were purchased from Thermo Fisher Chemical (Waltham, MA, USA). Acetone was purchased from Beijing Chemical Works Co., Ltd. (Beijing, China). ProteoMiner Low Abundance Protein Enrichment Kit was purchased from Bio-Rad (Hercules, CA, USA). LC-MS/MS analysis was performed by Novogene Co., Ltd. (Beijing, China).
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