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5 protocols using model rid 10a

1

Extraction and Quantification of Sugars and Starch

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Glucose, fructose, and sucrose were extracted from the ground samples using a modified method of Zhao et al. (2010) . Briefly, a mixture of 30 mg dried tissue was extracted three times with 80% (v/v) ethanol in an 80 °C water bath for 15 min. Extracts were centrifuged and supernatants were combined, filtered through 0.45 μm pore size nylon membranes, and 20 μl were used for glucose, fructose, and sucrose analysis by HPLC (Shimadzu Corp., Kyoto, Japan) with a refractive index detector (Model RID-10A). The mobile phase consisted of 80% (v/v) acetonitrile in water with a flow rate of 1 ml min−1. A Luna 5 µm NH2 100 Å, LC Column 250 × 4.6 mm from Phenomenex (Torrance, CA, USA) was used for the analysis which, was performed with the column maintained at 40 °C. Data acquisition was controlled by LabSolutions software (Shimadzu Corp.).
The pellets remaining from the above extractions were used for starch solubilization according to Zhao et al. (2010) . α-Amylase (Sigma-Aldrich, A3403) and amyloglucosidase (Sigma-Aldrich, A3042) were used to hydrolyse the pellets. The glucose content was assayed as described above by HPLC and used to calculate starch concentration.
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2

GPC Analysis of Polysaccharides

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GPC analysis was performed with a high performance liquid chromatography system equipped with a Shimadzu refractive index detector (Model RID-10A), and a Shimadzu LC-20AT pump. Polysaccharides were analyzed using two columns connected in series: a Supelco Progel-TKS G4000 and a Waters Ultrahydrogel 250 (300 × 7.8 mm). A degassed solution of 0.05 M NaNO3 prepared with ultra-pure water containing 0.02% NaN3 was used as solvent and eluent. One hundred μl of polysaccharide solutions (5 mg/ml) were filtered through a 0.22 μm PVDF membrane (GV, Millipore) and injected into the column using a manual valve. The eluent flow rate was of 0.6 ml/min and the temperature was held at 25 °C. The column was calibrated using dextran standards of different molecular weights (Sigma Aldrich, USA).
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3

Lactulose and Mannitol Absorption Assessment

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In the last week of experiment, the animals were fasted for 12 h and then received, by gavage, 2 mL of the solution (200 mg of lactulose and 100 mg of mannitol); samples of their urine were collected for 24 h. At the end, the collected urine volume was measured, recorded and stored at −80 °C [26 (link)]. Then, for the analysis, the urine was diluted 1:2 with distillated water, filtered (0.45 µm) and analyzed by the HPLC method.
Furthermore, the colonic feces of animals were quantified for their levels of SCFA, acetate, propionate, and butyrate. The extraction of the SCFA was performed by mixing 100 mg of luminal contents with 2 mL of perchloric acid (10%) and centrifuged (9000× g, 10 min, 25 °C). The supernatant was filtered (0.45 µm) and analyzed by HPLC [27 (link)].
The HPLC conditions for the analyses of lactulose, mannitol and SCFA were a Shimadzu HPLC system (Kyoto, Japan) with a degasses (Model DGU-14A), pump (Model LC-10AT), auto-sampler (Model SIL-20A), column oven (Model CTO-10AS), UV–vis detector (Model SPD-10AV), and a refractive index detector (Model RID-10A). The column used was Aminex HPX-87H (300 cm × 8.7 mm; BIO-RAD) in 55 °C with a pressure of 1920 psi, using H2SO4 0.005 mM as a mobile phase under isocratic conditions [28 (link)]. Lactulose, mannitol and SCFA levels (mg/g of feces) were determined by standard curves using commercial standards (Sigma-Aldrich).
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4

Xylose and Glucose Fermentation Assay

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Anaerobic batch fermentations were carried out in 100-ml medium bottles sealed with caps equipped with gas check valves. Yeast strains were aerobically pre-cultivated in SD medium for 3 days at 30 °C. Each pre-culture was separately inoculated into SD medium and aerobically cultivated for 24 h at 30 °C. Cells were collected and washed with distilled water. For xylose fermentation assay, these strains were inoculated into 50 ml fermentation medium, which contained 6.7 g/l of yeast nitrogen base without amino acids and 50 g/l of xylose. For glucose/xylose fermentation assay, these strains were inoculated into 50 ml fermentation medium, which contained 6.7 g/l of yeast nitrogen base without amino acids, 30 g/l of glucose, and 20 g/l of xylose. The initial cell density in the fermentation medium was adjusted to OD600 of 10. All fermentation experiments were performed at 30 °C with agitation (100 rpm).
Concentrations of glucose, xylose, glycerol, xylitol, and ethanol in the fermentation medium were analyzed by high-performance liquid chromatography (HPLC) (Prominence, Shimadzu, Japan) on a HPX-87H column (Bio-Rad), used together with a refractive index detector (model RID-10A, Shimadzu). The HPLC system was operated at 60 °C using 0.05% H2SO4 as the mobile phase (flow rate, 0.6 ml/min).
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5

Cell Concentration and Metabolite Quantification

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Cell concentrations were measured in a 10 mm path length cuvette using a UV-2450 double-beam spectrophotometer (Shimadzu, Kyoto, Japan) at 600 nm. One unit of absorbance at 600 nm corresponded to 0.3 g cell dry weight (cdw) l−1. Concentrations of glucose and fermentation metabolites (lactate, acetate, formate) were determined by the method described previously using Shimadzu LC20 HPLC (Shimadzu) equipped with a refractive index detector (model−RID-10A, Shimadzu) (Talluri et al., 2013 (link)). Briefly, the supernatants, obtained by centrifugation of the culture samples at 10 000 × g for 10 min, were filtered through the Nylon-membrane (Cole-Parmer, Vernon Hills, IL, USA) and eluted through a 300 × 7.8 mm Aminex HPX-87H (Bio-Rad, Hercules, CA, USA) column at 60oC using 5.0 mM H2SO4.
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