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The QGP-1 is a laboratory equipment used for the cultivation and maintenance of cell lines. It provides a controlled environment for the growth and proliferation of cells, ensuring consistent and reliable results in cell-based research and experiments.

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18 protocols using qgp 1

1

Neuroendocrine Tumor Cell Lines Characterization

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Pancreatic neuroendocrine tumor cell lines BON-1 [39 (link)] and QGP-1 [40 (link)] (both obtained from Japanese Collection of Research Bioresources) and the typical bronchial carcinoid-NET cell line NCI-H727 (H727) [41 (link)] (purchased from ATCC, Manassas, VA) underwent authentication at the DSMZ (Braunschweig, Germany, in 2014), and their neuroendocrine features were confirmed by immunocytochemistry. Participating researchers received cell aliquots of the same passage together with SOPs for culture procedures. Cell lines had been tested for PIK3CA mutations by panel sequencing (Ion Seq Torrent Lung and Colon Panel v2). No PIK3CA mutations had been detected. BYL719 is a selective PI3Kα inhibitor developed by Novartis Pharma. All cell lines have been treated with different concentrations (10 nM– 250 μM) of BYL719 (kindly provided by Novartis) versus DMSO control for several time periods according to assay type. Everolimus was purchased from Selleckchem (Munich, Germany) and used in concentrations between 1 and 10nM.
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2

Characterization of Pancreatic Cancer Cell Lines

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HPAF-II, AsPC-1, BxPC-3, CAPAN-1, CAPAN-2, CFPAC-1, Hs766T, MIAPaCa-2, Mpanc96, PANC-1, PSN-1, and SW1990 cells were obtained from ATCC (Manassas, VA, USA). Thirteen cell lines (KMP2, KMP3, KMP4, KMP5, KMP8, KP1L, KP1NL, KP2, KP3, KP3L, KP4, PH61N, and QGP-1) and normal human fibroblasts (WI-38, TIG-1, and IMR-90 cells) were obtained from JCRB cell bank (Tokyo, Japan). HPC-Y0, HPC-Y3, and HPC-Y25 were kindly given to us by Dr. Otsuji E (Kyoto Prefectural University of Medicine). PK-59 cells were obtained from RIKEN Bioresource Research Center (Ibaraki, Japan). All cell lines were cultured in RPMI-1640 medium or DMEM (Wako, Osaka, Japan) containing 10% fetal bovine serum (FBS) at 37°C with 5% CO2.
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3

Induction of EMT in Pancreatic Cancer Cells

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The human pancreatic cancer cell lines Panc-1, MIA PaCa-2, and BxPC-3 were obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA), and KP-3 and QGP-1 were purchased from the Japanese Collection of Research Bioresources Cell Bank (Osaka, Japan). Panc-1 cells were cultured in high-glucose Dulbecco's modified Eagle's medium (DMEM; Thermo Fisher Scientific, Waltham, MA, USA) containing 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin (Thermo Fisher Scientific). MIA PaCa-2 cells were cultured in high-glucose DMEM containing 10% FBS, 2.5% horse serum, and 1% penicillin–streptomycin. BxPC-3, KP-3, and QGP-1 cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 medium (Thermo Fisher Scientific) containing 10% FBS and 1% penicillin–streptomycin. All cells were cultured at 37°C in an atmosphere containing 5% CO2. TGF-β (TGF-β1) was obtained from EMD Millipore (Billerica, MA, USA). Cells were treated with 10 ng/mL TGF-β for 72 h to induce EMT.
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4

Culturing Human Neuroendocrine Cell Lines

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The human neuroendocrine cell lines BON and QGP-1 (pancreatic), LCC-18 (colonic), and H727 and UMC-11 (pulmonary) were cultured in RPMI 1640 containing 10% fetal calf serum in a humidified atmosphere at 37°C with 5% CO2. BON cells were a kind gift of Courtney Townsend (University of Texas, Galveston, TX, USA). LCC-18 cells were kindly donated by Kjell Öberg (University of Uppsala, Sweden). QGP-1 were obtained from the Japanese Collection of Research Bioresources, and H727 and UMC-11 from ATCC (Manassas, VA, USA). Cells were cultured for no longer than 15 passages. All human cell lines have been authenticated by DSMZ (Braunschweig, Germany) using STR profiling.
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5

Culturing and Treating Neuroendocrine Tumor Cells

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Human pancreatic NET cell line BON1 [9 (link)] (kindly provided by R. Göke, University of Marburg, Marburg, Germany) and pancreatic islet tumor cell line QGP-1 [9 (link)] (originally obtained from the Japanese Collection of Research Bioresources Cell Bank, Osaka, Japan), were both maintained in Dulbecco’s modified Eagle’s medium/F12 (at a ratio of 1:1) supplemented with 10% fetal bovine serum (FBS), 1% penicillin/streptomycin and 0.4% amphotericin B in a 37 °C humidified incubator with 5% CO2. Human bronchopulmonary neuroendocrine NCI-H727 tumor cells [9 (link)] (originally obtained from ATCC, Manassas, VA, USA) and the human small intestinal NET cell line GOT1 [9 (link),39 (link)] (kindly provided by O. Nilsson, Sahlgrenska University Hospital, Göteborg, Sweden) were both cultured in Roswell Park Memorial Institute medium-1640 (RPMI-1640) supplemented with 10% FBS, 1% penicillin/streptomycin, and 0.4% amphotericin B in a 37 °C humidified incubator with 5% CO2.
To treat NET cells with WNT974 (also named LGK974; Novartis, Basel, Switzerland) or PRI-724 (Selleckchem, Germany), the cell lines were first seeded into cell culture dishes and grown overnight prior to treatment with various doses of WNT974 (1–32 µM, dissolved in dimethyl sulfoxide (DMSO)) or PRI-724 (1–10 µM, dissolved in DMSO) for different periods of time according to the assays listed below.
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6

Characterization of pNET Cell Lines

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QGP-1, a human pNET cell line, was purchased from the Japanese Collection of Research Bioresources (JCRB, Tokyo, Japan). NIT-1, a mouse pNET cell line, was purchased from the Bioresource Collection and Research Center (BCRC, Hsinchu, Taiwan). The passages of the two cell lines used in this study were less than 15. We sent the QGP-1 cell line to the Center for Genomic Medicine of National Cheng Kung University for genotyping in June 2016, and the result showed the same STR PCR DNA profile as those in the JCRB database. QGP-1 and NIT-1 cells were cultured in RPMI-1640 (HyClone, South Logan, Utah, USA) medium and F12-Kaighn's (Gibco, Grand Island, NY, USA) medium, respectively, containing 10% fetal calf serum and antibiotics. PTEN and c-Myc expression plasmids were purchased from Addgene (Cambridge, MA, USA). shRNAs targeting PTEN, LKB1, AKT and c-Myc were obtained from the National RNAi Core Facility of Academic Sinica (Taipei, Taiwan). Rapamycin and RAD001 were purchased from LC Laboratories (Boston, MA, USA) and Selleckchem (Houston, TX, USA), respectively. Metformin was purchased from TOCRIS (Bristol, UK), and 10058-F4 was purchased from Calbiochem (San Diego, CA, USA).
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7

Culturing HEK293 and QGP-1 Cell Lines

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HEK (human embryonic kidney) 293 cell and QGP-1 (a human cell line derived from pancreatic islet cell carcinoma) were supplied from the Japanese Collection of Research Bioresources (JCRB) Cell Bank (Osaka, Japan). HEK293 and QGP-1 cells were maintained at 37°C, in 5% CO2 with high glucose DMEM (HEK293) or RPMI-1640 (QGP-1) (Wako, Osaka, Japan) containing 10% fetal bovine serum (Invitrogen, Carlsbad, CA), 100 units/ml penicillin (Wako), and 0.1 mg/ml streptomycin (Meiji Seika, Tokyo, Japan).
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8

Pancreatic Cell Line Cultivation and EMT Induction

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The nonmalignant human pancreatic ductal epithelial cell line hTERT‐HPNE was obtained from ATCC and cultured as recommended by the supplier. The human pancreatic cancer cell lines Panc‐1, MiaPaCa‐2, and BxPC‐3 were obtained from ATCC, and KP‐3 and QGP‐1 were purchased from the JCRB Cell Bank. Panc‐1 cells were cultured in high‐glucose DMEM (Thermo Fisher Scientific) containing 10% FBS and 1% penicillin‐streptomycin (Thermo Fisher Scientific). MiaPaCa‐2 cells were cultured in high‐glucose DMEM containing 10% FBS, 2.5% horse serum, and 1% penicillin‐streptomycin. BxPC‐3, KP‐3, and QGP‐1 cells were cultured in RPMI‐1640 medium (Thermo Fisher Scientific) containing 10% FBS and 1% penicillin‐streptomycin. All cells were cultured at 37°C in an atmosphere containing 5% CO2. For all EV studies, EV‐depleted medium was prepared using exosome‐depleted FBS (Thermo Fisher Scientific). Transforming growth factor‐β was obtained from EMD Millipore. Cells were treated with 10 ng/mL TGF‐β for 72 hours to induce the EMT.
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9

Characterization of GEP-NEN Cell Lines

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The following GEP-NEN cell lines were used for in vitro experiments: pancreatic: BON [58 (link)] and QGP-1 [59 (link)]; obtained from Japanese Collection of Research Bioresources), ileal: KRJ-1 [60 (link)] and colonic: LCC-18 [61 ].
All cell lines were authenticated (if indicated as unique) by genetic STR typing by the DSMZ, Braunschweig, Germany in 2012 and 2013 and only cells passaged not longer than 15 passages after receipt were used. Cells were tested periodically for maintained cell line specific expression of neuroendocrine markers (chromogranin A, synaptophysin, cytokeratin, vimentin, syntaxin) by immunofluorescence microscopy. All cell lines were grown in Quantum 263 for tumor cells (GE Healthcare Munich, Germany) including 1% penicillin/streptomycin or in cell line specific medium (containing 10% FBS gold and 1% penicillin/streptomycin): BON and KRJ-1 in Dulbecco's Modified Eagle Medium: Nutrient Mixture 1:1 F-12 (DMEM/F12) with stable glutamine, QGP-1 were cultured in RPMI 1640 with stable glutamine and LCC-18 were grown in DMEM 4.5g/l glucose with stable glutamine. The non-neuroendocrine HT-29 and the FOXM1 overexpressing U2OS cell lines were used as controls, if indicated.
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10

Culturing Human Pancreatic NET Cells

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Human pancreatic NET cell lines BON (BON, provided by Dr. Mark Hellmich, The University of Texas Medical Branch at Galveston) and QGP-1 (obtained from the Japanese Collection of Research Bioresources Cell Bank (JCRBC)) were cultured, according to our routine and standard protocol. Briefly, BON or QGP-1 cells were, respectively, grown in glutamine-containing DMEM: F-12 media (Gibco) or RPMI1640 (Corning, Lawrenceville, GA, USA) media with 10% fetal bovine serum (FBS), containing penicillin/streptomycin, at 37 °C and in the presence of humidity and 5% CO2.
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