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6 protocols using protoblue safe

1

Purification and Assay of His6-PA1198

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CtpA and LbcA were purified as described above. To purify His6-PA1198, E. coli strain M15 (pREP4) (Qiagen) containing pAJD2948 was grown in 500 mL of LB broth at 37°C to an OD600 of 0.6 to 1.0. Protein production was induced with 1 mM IPTG at 37°C for 3 h. His6-PA1198 was purified natively by Ni-NTA-agarose affinity chromatography in 50 mM NaH2PO4 and 300 mM NaCl, as recommended by the manufacturer (Qiagen). Protein was eluted in 50 mM NaH2PO4, 300 mM NaCl, 50 mM imidazole, pH 8. Assays were done as described previously (23 (link), 36 (link)). The samples were separated by SDS-PAGE and stained with ProtoBlue Safe (National Diagnostics). For mutant CtpA protein experiments, ImageJ analysis was used to determine the densities of the His6-PA1198 bands. His6-PA1198 degradation was quantified by comparing His6-PA1198 band density to that in the reaction with inactive CtpA-S302A. Averages from two independent experiments are reported.
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2

Metabolic Assessment of Rats

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Rats were placed for 16 h in metabolic cages with ad libitum access to food and drinking water. The body weight, water intake and urinary volume were measured, and urine was collected over ice. Urine and blood parameters were measured by using a UniCel DxC 800 Pro Synchron (Beckman Coulter, Fullerton, CA, USA). The concentration of the LMW Clara cell protein (CC16) in urine was measured in duplicate by enzyme-linked immunosorbent assay (ELISA; abx155347, ABEXA, Cambridge, UK). Albuminuria was measured via Coomassie Blue staining by using ProtoBlue Safe (EC-722, National Diagnostics, Atlanta, GA, USA) according to the manufacturer’s instructions.
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3

Purified Prostasin-HAI-1 Complex Analysis

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The purified prostasin-HAI-1 complexes from the immunoaffinity column were resolved by a 7.5% SDS-PAGE under non-boiled conditions. A gel strip was then sliced from the gel from the previous step, which was then boiled with SDS sample buffer containing no reducing agent. The boiled gel strip was placed on the top of a new 7.5% SDS-PAGE gel and subjected to electrophoresis in the second dimension. The first and second dimensional gels were stained using Protoblue Safe (National Diagnostics). The protein spots of interest were sliced from the gel and subjected to proteomics-based protein identification provided as service by ProtTech (Eagleville, PA).
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4

Chromatography Resins for Protein Purification

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The conventional liquid chromatography resins CM-Sepharose and DEAE-Sepharose, and activated Sepharose beads were obtained from GE healthcare, (Piscataway, NJ). Protoblue Safe was purchased from National Diagnostics (Atlanta, Georgia).
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5

Urine and Blood Biomarker Analysis

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Mice were placed overnight in metabolic cages with ad libitum access to food and drinking water. Urines were collected over ice and body weight, water intake and diuresis were measured at the indicated time point (49 (link)). Blood (from sublingual vein) was obtained after anesthesia with ketamine/xylazine or isoflurane. Urine and blood parameters were measured using a UniCel DxC 800 pro Synchron (Beckman Coulter, Fullerton, CA, USA), whereas urinary Clara cell protein (CC16) concentration was measured in duplicate by enzyme-linked immunosorbent assay (ELISA; BIOMATIK EKU03200) (44 (link)). Albuminuria was measured by Coomassie Blue staining by using ProtoBlue Safe (EC-722, national diagnostics) according to manufacturer instructions.
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6

SDS-PAGE Analysis of E. scolopes OMVs

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Samples containing 10 μg of total protein from E. scolopes OMVs were loaded onto a precast 12% bis-tris polyacrylamide gel (Invitrogen), together with a Precision Plus Protein standard (Bio-Rad). The proteins were separated for 1 h at 150 V at 4 °C in a Mini-Vertical Electrophoresis System (Bio-Rad), stained overnight in 90% Protoblue Safe (National Diagnostics,) in ethanol, rinsed in deionized water, and imaged with GelDoc-It (UVP) system.
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