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Escherichia coli bl21 codonplus de3 ril cells

Manufactured by Agilent Technologies

Escherichia coli BL21-CodonPlus (DE3)-RIL cells are a bacterial strain used in molecular biology and protein expression applications. The cells are genetically engineered to enhance the production of recombinant proteins. The core function of these cells is to provide a host system for the expression and production of target proteins.

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4 protocols using escherichia coli bl21 codonplus de3 ril cells

1

Recombinant Expression and Purification of SF3A1-UBL Protein

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SF3A1-UBL (residues 704 to 793) was cloned into pET24b (Novagen) in fusion with an N-terminal GB1 solubility tag and a 6×His tag cleavable by tobacco etch virus (TEV) protease (pET24-GB1-TEV-UBL). Mutants were generated by site-directed mutagenesis using the quick-change protocol and specific primers listed in SI Appendix, Table S3. All plasmids were sequenced and transformed into Escherichia coli BL21‐Codon Plus (DE3)‐RIL cells (Agilent Technologies) for protein expression (detailed expression protocol can be found in SI Appendix). The protein was purified by Ni-affinity chromatography and size exclusion chromatography in the NMR buffer [10 mM sodium phosphate (pH 6), 50 mM NaCl] (see SI Appendix for a detailed purification protocol). Final protein purity was checked by sodium dodecyl sulfate gels and analyzed for nucleic acid contamination using A260nm/A280nm. Protein concentration was estimated using A280nm by calculating with the theoretical extinction coefficient of 9,970 M−1 cm−1 and stored at −80 °C. All point mutants were produced using the same protocol, and their correct folding was assessed by recording a 1D 1H NMR spectrum (SI Appendix, Fig. S3). GST-SF3A1-UBL for EMSA experiments was prepared as before (16 (link)). U1 snRNP in vitro reconstitution was performed as described previously (21 (link)).
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2

Purification of Engineered Hsp104 Chaperones

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S. cerevisiae Hsp104Y257A and Hsp104Y662A were generated by QuikChange site-directed mutagenesis (Agilent). All other Hsp104 pore-loop mutants were generated by overlap extension PCR followed by cassette mutagenesis. Hsp104 and its mutants were cloned into the pProEX-HTb vector (Invitrogen), which adds a tobacco etch virus protease cleavable N-terminal His6-tag, and were overexpressed in Escherichia coli BL21-CodonPlus (DE3)-RIL cells (Agilent) by isopropyl β-d-thiogalactopyranoside induction. Proteins were purified from cleared lysates by affinity chromatography on nickel-nitrilotriacetic acid (Ni-NTA) agarose column (Qiagen) and eluted in 25 mM Tris/HCl pH 7.5, 300 mM NaCl, 5% glycerol, and 5 mM β-mercaptoethanol containing 300 mM imidazole, or in TBS using a 20–800 mM imidazole gradient (Hsp1041-360). The N-terminal His6-tag was cleaved off and removed by reapplying the protein to a Ni-NTA agarose column. Hsp1041-360 was further purified by negative binding to an anion-exchange column followed by binding to a Mono-S column (GE Healthcare). His6-Ydj1 and His6-Hsp70 were purified as described [22 (link)].
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3

Overexpression of Recombinant Proteins

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Expression plasmids contain cDNAs from Kluyveromyces lactis and Saccharomyces cerevisiae. Recombinant Ku70 and Ku80 proteins were overexpressed in Trichoplusia ni High Five™ cells (ThermoFisher) in ESF 921 medium (Expression systems) or ESF 921 Delta Series Methionine Deficient medium (Expression systems) for selenomethionine-derivatized proteins. Cells were grown at 27 °C at 110 rpm for 72 hr after infection. Other recombinant proteins were overexpressed in Escherichia coli BL21-CodonPlus(DE3)-RIL cells (Agilent) in LB broth (Sangon Biotech), or M9 medium for selenomethionine-derivatized proteins. Cells were grown at 37 °C at 225 rpm until OD600 reached 0.7 then immediately induced by addition of isopropyl β-D-1-thiogalactopyranoside (IPTG) (Amresco) to a final concentration of 0.1 mM. After induction, cells were grown for 16 hr at 22 °C.
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4

Purification and Evaluation of TAA Proteins

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Full-length complementary DNA of the TAAs Sui1 (GenBank accession number: JN545747), RalA (BM 560822), p62 (AF057352), p53 (AB082923), c-myc (K02276), and NY-ESO-1 (NM 001327) were amplified through polymerase chain reaction as previously described (1 ,2 (link)). The recombinant proteins were expressed in Escherichia coli BL21-CodonPlus (DE3)-RIL cells (Agilent Technologies). Each TAA extract was added to Ni Sepharose 6 Fast Flow (GE Healthcare UK), and the column was washed with 50 mmol/L imidazole in phosphate-buffered saline. Purified TAA recombinant proteins were eluted with 200 mmol/L imidazole in PBS. DNA sequencing confirmed that the correct gene was inserted into the constructed plasmid. Serum samples collected from patients and controls were analyzed through ELISA as previously described (2 (link)). Serum AFP was measured through enzyme-linked fluorescent assay as previously described (20 (link)).
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