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19 protocols using cobas 701

1

Evaluating Kidney Function using Cystatin C and Creatinine

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At Wave 1, a venous blood sample (25 mL) was collected from each participant who provided consent. Samples were transported to a central laboratory in temperature-controlled shipping boxes where they were centrifuged, aliquoted into cryovials and stored at −80°C. Cystatin C and creatinine were measured simultaneously from frozen plasma. Cystatin C was measured using a second-generation particle-enhanced immunoturbidimetric assay (Roche Tina-quant) on a Roche Cobas 701 analyser. The assay has a measuring range of 0.40–6.80 mg/L and is traceable to the European reference standard material (ERM-DA471/IFCC) for cystatin C. Creatinine was measured on the same analyser using an enzymatic method traceable to isotope-dilution mass spectrometry. GFR was estimated using the Chronic Kidney Disease Epidemiology Collaboration equations for cystatin C [18 (link)] or creatinine [19 (link)].
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2

Maternal Characteristics and Pregnancy Outcomes

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The basic characteristics of all pregnant women, including age, height, pre-pregnancy weight, number of births, annual family income and alcohol consumption during pregnancy were obtained using a questionnaire. At 24–28 week of obstetric examinations, blood samples were refrigerated and centrifuged at 4 °C by a laboratory physician. Plasma and serum samples were stored at −70 °C until assayed. The OGTT test was performed as in previous studies [19 (link)]. Plasma glucose was measured at fasting and 1 h and 2 h after the 75 g glucose load. The plasma glucose, serum iron and calcium concentration were measured by an automatic biochemical analyzer (Cobas 701, Roche), serum ferritin was measured by Abbott i2000 automated immune analyzer. Adverse pregnancy outcomes included caesarean section, postpartum hemorrhage [20 (link)] (≥500 mL for vaginal deliveries and ≥1000 mL for deliveries by caesarean section), hydramnios[21 (link)] (≥2000 mL of amniotic fluid on ultrasound during pregnancy), premature rupture of membranes [22 (link)], preeclampsia [23 (link)] (SBP≥140 mmHg and/or DBP≥90 mmHg with urinary protein ≥0.3 g/24 h or random urine protein), preterm (gestational age <37 weeks), macrosomia [24 (link)] (birth weight ≥4000 g), neonatal hypoglycemia (blood glucose <2.2 mmol/L) and neonatal respiratory distress [25 (link)].
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3

Biomarker Monitoring in Rare Metabolic Disorder

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Measurements of serum HGA (s‐HGA) and s‐Tyr were performed in pre‐breakfast samples (pre‐dose in treated patients) at each visit to the clinic. Measurements of 24‐h urinary excretion of HGA (u‐HGA24) and urea (u‐urea24, used here as a proxy measure of protein intake) were performed in urine collected during 24 h at the clinic visits.
The protocol did not stipulate when the serum samples were to be collected relative to the urine collection period. At Centre 1, the serum was sampled before starting urine collection and at Centre 3 after its completion. At Centre 2, serum was collected before start of urine collection at baseline but after urine collection at Month 12.
HGA and tyrosine in serum and urine were determined by two earlier presented liquid chromatography–mass spectrometry methods.10, 11 Urine urea was assayed photometrically using an automated assay (hydrolysis with urease and subsequent oxidation of NADH) on a Roche Cobas 701.
All patients, including controls, underwent slit‐lamp examinations at all visits to the clinics to check for possible development of keratopathies. Patients were further instructed to contact the investigator in case of any ocular symptoms. When this occurred, slit‐lamp examinations were performed also between scheduled visits.
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4

Serum Biomarker Measurement Protocol

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The serum AST, ALT, triglyceride, cholesterol, and low‐density‐lipoprotein levels were determined by an automatic biochemical analyzer (Cobas 701, Roche Diagnostics). All measurements were performed according to the manufacturer's instructions.
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5

Standardized Measurement of Blood Biomarkers

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For the measurement of clinical variables in blood serum, we collected fasting peripheral venous blood from all the participants and isolated the serum by centrifugation. Total cholesterol, high density lipoprotein (HDL) cholesterol, low density lipoprotein (LDL) cholesterol, triglycerides and fasting glucose were measured by colorimetric enzymatic assays (cobas 701; Roche, Mannheim, Germany); fasting insulin by a chemiluminescence immunoassay (cobas E411); glycated hemoglobin (HbA1C) by high-performance liquid chromatography (Premier Hb9210; Lab Care, England); adiponectin by the lanthanide chelate excite ultra assay (LANCE; Perkin Elmer, Waltham, MA), and high-sensitive C-reactive protein (hs-CRP) by a particle-enhanced immunoturbidimetric assay (cobas 502). Blood insulin was used to calculate the insulin resistance index using the homeostasis model assessment (HOMA-IR).
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6

Serum SAA Concentration in Foals

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The serum concentration of SAA was determined in umbilical blood and jugular blood from the foal using the Vet-SAA Eiken kit (Eiken SAA, Eiken Chemical Co., Ltd., Tokyo, Japan). The analyses were performed on turbidimetric immunoassay (TIA) using latex Agglutination by Cobas 701 (Roche Diagnostics International, Rotkreuz, Switzerland) clinical chemistry analyzer. A reference level of <5 mg/L was used.
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7

Immunological and Viral Biomarker Measurements

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CD4 T-cell counts were determined in fresh whole blood using an Epic XL-MCL flow cytometer (Beckman-Coulter, Brea, CA, USA) according to the manufacturer’s instructions. Plasma HIV-1 RNA concentration was measured using quantitative polymerase chain reaction (COBAS Ampliprep/COBAS Taqman HIV-1 test, Roche Molecular Systems, Basel, Switzerland) according to the manufacturer’s protocol. The detection limit for this assay was 20 HIV RNA copies per milliliter.
High-sensitive C-reactive protein (hsCRP) and β2-microglobulin were determined with an immunoturbidimetric assay using COBAS 701 (Roche Diagnostics, GmbH, Mannheim, Germany). d-dimer levels were determined using an automated latex enhanced immunoassay (HemosIL, d-Dimer HS 500, Instrumentation Laboratory) in plasma samples stored at −20°C.
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8

Biomarker Assessment in Plasma Samples

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Plasma samples were aliquoted and stored at −20°C until subsequent analysis of the following biomarkers: high‐sensitivity C‐reactive protein (hsCRP), interleukin (IL)‐6, TNF‐α, and soluble CD14 (sCD14). The levels of hsCRP were determined with an immunoturbidimetric serum assay using Cobas 701 (Roche Diagnostics, Mannheim, Germany). Commercially available enzyme‐linked immunosorbent assays were used for the assay of IL‐6 (Quantikine HS Human IL‐6 immunoassay kit; R&D Systems, Minneapolis, MN), TNF‐α (using Quantikine HS Human TNF‐α immunoassay kit; R&D Systems), and sCD14 (Human CD14 ELISA Kit; Thermo Fisher Scientific, Waltham, MA) following the manufacturers' instructions.
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9

Multiparametric Biomarker Assessment in AECOPD-PH

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WBC, RBC, RDW, and MPV (XN-2000, SYSMEX, Japan). ALB, TG, TC, HDL, LDL and TBIL (Cobas8000, Roche, Germany). FDP and DD (ACL-TOP-750, Werfen, Spain). NT-ProBNP (VITROS 5600, Ortho Clinical Diagnostics, American). CRP (VITROS 5600, Ortho Clinical Diagnostics, American), IL-6 and PCT (Cobas701, Roche, Germany). Echocardiography was performed in AECOPD-PH patients (EPIQ-7C, Philips, Netherlands).
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10

Kidney Function Assessment in Agricultural Workers

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In both cohorts, questionnaire data and morning blood samples were collected immediately before and at end of harvest (November and April, respectively). Blood samples were drawn by phlebotomists. Serum was separated, frozen at −77°C and shipped to Lund, Sweden, for analysis. Creatinine and cystatin C were analysed in serum at the Department of Clinical Chemistry of the Skåne University Hospital in Lund, Sweden, using the Cobas 701-instrument (Roche Diagnostics, Basel, Switzerland). Creatinine was measured using an IDMS-calibrated, enzymatic colorimetric method. Cystatin C was measured using a particle enhanced immunoturbidimetric assay, which was standardised against the international reference material ERM-DA471/IFCC. Samples from before and end of harvest from each cohort were analysed in the same session, in order to eliminate analysis batch effects introducing spurious cross-harvest eGFR changes. All analyses were performed in the same laboratory for both the Nicaraguan and Salvadoran samples but at different time points. The laboratory is accredited according to ISO 15189. The details of analysis were also reported previously.6 24 25 (link)
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