The largest database of trusted experimental protocols

4 protocols using anti rab14

1

Immunoaffinity Purification of IRAP Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
immunoaffinity purified rabbit antibodies specific for the cytosolic IRAP domain (Keller et al., 1995 (link)); mouse monoclonal IRAP antibodies (a kind gift from M. Birnbaum, University of Pennsylvania) (Garza and Birnbaum, 2000 (link)); goat polyclonal anti-EEA1 and anti-mouse transporter 1, ATP-binding cassette subfamily B member transporter associated with antigen processing (TAP1) (both Santa Cruz Biotechnologies); rat anti-mouse lysosome-associated membrane protein (LAMP)1 clone 1D4B, mouse monoclonal anti-STX6, mouse monoclonal anti-GM130 (BD Pharmingen); rabbit polyclonal anti-STX6 (ProteinTech Group, Chicago, IL, United States); rat monoclonal anti-mouse mannose receptor, clone MR5D3 (AbD Serotec); rabbit polyclonal anti-Sec22b (Synaptic Systems); rabbit polyclonal anti-Rab14 (Sigma Aldrich); rat monoclonal anti-HA tag (Roche); rabbit polyclonal anti-LC3 (MBL). All secondary reagents were Alexa-coupled highly cross-adsorbed antibodies from Molecular Probes (Invitrogen).
+ Open protocol
+ Expand
2

Immunohistochemical and Immunofluorescence Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-CHML (Sigma-Aldrich) was diluted 1:20 to stain HCC TMA slides and 1:50 for immunofluorescence staining. Anti-Rab14 (Sigma) was diluted 1:100 in IF assay. Briefly, for IHC, sections of clinical specimens were deparaffinized with xylene and rehydrated with ethanol, followed by staining with CHML antibody and horseradish peroxidase (HRP)-linked anti-Rabbit IgG, and further development with 3,3′-diaminobenzidine (DAB). TMA sections were further photographed and analyzed by Vecture 2 (PerkinElmer). The same algorithm was used to score every core (Supplemental Materials). For IF, cells on slides were fixed in 4% formaldehyde, followed by staining with indicated primary antibodies and fluorescent secondary antibody (Alexa Fluor 488-conjugated donkey anti-Rabbit IgG and Alexa Fluor 555-conjugated goat anti-Rabbit IgG, 1:1000) and were photographed by confocal microscope (Zeiss, LSM 510 NLO).
+ Open protocol
+ Expand
3

Immunoblotting Analysis of Cell Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested and disrupted in IP lysis buffer (25 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% NP40, 1 mM EDTA, 5% glycerol; Thermo Scientific, MA, USA). Extracted proteins were separated by SDS-PAGE and transferred onto nylon membranes. Binding of primary antibodies was detected using peroxidase-conjugated secondary antibodies. Visualization was performed using the ChemiDoc XRS system with Image Lab software (Bio-Rad, CA, USA). Antibodies included anti-CPT1A, anti-cleaved caspase 9, anti-MLKL (phospho S358) (Abcam, MA, USA), anti-cleaved-PARP, anti-cleaved caspase 3, anti-normal rabbit IgG and anti-normal mouse IgG (Cell Signaling Technologies, MA, USA), anti-Rab14, anti-Rab7A, anti-MLKL and anti-β-actin (Sigma-Aldrich, Darmstadt, Germany), anti-HSP60 (Santa Cruz, CA, USA), and anti-LC3 I/II (Novus Biologicals, CA, USA).
+ Open protocol
+ Expand
4

Affinity Purification of Rab14 Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-Rab14 (Sigma-Aldrich) antibody or the control Rabbit IgG was ligated to Dynabeads M450 (Thermo Fisher) according to the manufacturer’s protocol. Briefly, 200 µg goat anti-Rabbit antibody was incubated with 1 mL beads in 1 mL 0.1 M borate buffer for 30 min, then adding 20 µL 5% BSA, rotating at room temperature for 48 h. 200 µL beads were continued to incubate with 10 µg Rabbit Anti-Rab14 antibody or control Rabbit IgG at 4 °C overnight. Endomembrane was prepared as described previously with some modifications60 . Briefly, 3 × 108 PLC/PRF/5 cells were washed by pre-cold PBS, scrapped in 1 mL cold PBS, then incubated with hypotonic buffer (10 mM Tris–HCl) for 2 min, the pelleted cells were then resuspended in homogenesis buffer (250 mM sucrose, 3 mM EDTA) with protease inhibitor. Twenty tightly strokes of homogenizer were performed, followed by 3000 × g centrifugation for 10 min. The supernatant was mixed with 62% sucrose to reach a final sucrose concentration of 42%. Discontinuous sucrose gradient ultracentrifugation was conducted, sucrose gradient were 42%, 35%, 25%, 4 mL for every gradient. Then centrifuge at 200,000 × g overnight. Take 1 mL every time from top to bottom. Mix the 35% sucrose part, diluted 5 times with PBS. This fraction was then incubated with the previously prepared beads overnight. For MS/MS detection, beads were eluted by 1% SDS PBS for 5 min.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!