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11 protocols using rabbit anti pdgfrα

1

Immunofluorescent and Oil Red O Staining of Neonatal Lungs

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Immunofluorescent staining was performed as previously described 14 (link). Primary antibodies used are: mouse anti-GFP (Santa Cruz, CA); mouse anti-ACTA2 (Sigma); rabbit anti-ACTA2 (Abcam, MA); rabbit anti-PDGFRα (Cell Signaling). Nuclei were counterstained with Dapi. For quantitative analyses, multiple images (n>8, each contains 300 to 600 cells) were used to count the ratio of labeled cells. Quantitative data are presented as average values+/-standard error of the mean. Sections from at least three lungs were analyzed for each data point.
For Oil red O staining, frozen sections of neonatal lungs (8 um) were air dried, washed with tap water, rinsed with 60% isopropanol and then stained with freshly prepared Oil Red O solution for 15 minutes. The stained sections were rinsed with 60% isopropanol followed by distilled water and then preserved in VECTASHELD mounting medium with Dapi (to visualize nuclei).
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2

Quantifying Engrafted Human Cells

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Animals were killed using sodium pentobarbital and perfused transcardially with saline followed by 4% paraformaldehyde, and their brains were processed for immunocytochemistry as previously described. Sagittal equidistant cryosections of sections (20 μm) spanning the whole brain were analysed. Human cells were identified through immunostaining with anti-human nuclear antigen (1:800, MAB1281, Millipore, Temecula, CA, USA). Engrafted human cells were mapped using Metamorph imaging software and an automated fluorescence microscope (Leica Microsystems, Wetzlar, Germany). Brain sections were then co-stained to define phenotype, using combinations of the following antibodies: mouse anti-huntingtin antibody clone EM48 (1:250, MAB5374, Millipore); mouse anti-glial fibrillary acidic protein (GFAP) (1:800, SMI-21, Covance, Princeton, NJ, USA); rabbit anti-Olig2 (1:400, RA25081 Neuromics, Edina, MN, USA); rabbit anti-PDGFRα (1:400, 5241 Cell Signaling Technology, Danvers, MA, USA). Slides were analysed serially every twenty-fourth section using the optical fractionator method to estimate the total number of engrafted human cells of each histological marker (GFAP, Olig2, PDGFRα) using StereoInvestigator imaging software (MicroBrightField, Burlington, VT, USA).
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3

Western Blot Analysis of Brain Tissue

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Right mouse brain tissue was homogenized in RIPA lysis buffer containing protease inhibitors. The supernatant was collected after centrifugation and the protein concentration of the samples was determined by BCA protein assay kit (Bio‐Rad). Proteins were separated by polyacrylamide gel electrophoresis and transferred to cellulose acetate membranes. After blocking with 5% milk for 1 h, the primary antibody was incubated overnight. The primary antibodies were rabbit anti‐MBP (Abcam), rabbit anti‐β‐actin (Santa Cruz), rabbit anti‐PDGFR‐α (Cell Signaling), and rabbit anti‐APC (SigmaAldrich). Horseradish peroxidase‐conjugated secondary antibody (HRP, Abgent) was incubated for 1 h at room temperature. Protein bands were exposed using chemiluminescent reagents (Millipore). Image capture was performed with a chemiluminescent gel imager. Protein gray values were calculated with image j analysis software and corrected with β‐actin. The grayscale of the protein was expressed in relative values.
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4

Antibodies for Immunohistochemistry and Western Blot

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The following primary antibodies were used for IHC or western blot analyses: mouse anti-GPR56 (H11) (1:200)40 (link) and rabbit anti-GPR56 (199) (1:200)19 (link), rabbit anti-MBP (Millipore; Cat #AB980, 1:200), rat anti-MBP (Abcam, Cat# ab7349), mouse anti-O4 (Millipore; Cat #MAB345, 1:400), rabbit anti-NG2 (Millipore; Cat #AB5320, 1:200), goat anti-Sox2 (Santa Cruz; Cat #sc-17320, 1:400), rabbit anti-Olig2 (kind gift from Charles Stiles, 1:10,000), rat anti-PDGFRα (BD Bioscience; Cat #558774, 1:500), rabbit anti-PDGFRα (Cell Signaling Technologies; Cat #3164S, 1:500) and rat anti-Ki67 (Affymetrix eBioscience; Cat #14-5698-80, 1:100), rat anti-BrdU (Accurate Chemical and Scientific Corporation; Cat #OBT0030S, 1:100), rabbit anit-PLP (Abcam, Cat #ab28486, 1:1,000), mouse anti-RhoA (Cytoskeleton, Cat# ARH03-A, 1:500), mouse anti-CDK2 (Santa Cruz; Cat #sc-6248, 1:1,000), mouse anti-β-actin (Sigma, Cat #A5044, 1:5,000) and mouse anti-Ki67 (BD Bioscience; Cat #550609, 1:100). Secondary antibodies were goat anti-mouse or anti-rat conjugated with either Alexa 488 (Life Technologies, 1:1,000) or Alexa 546 (Life Technologies, 1:1,000) and goat anti-rabbit conjugated with Alexa 546 or 555 (Life Technologies, 1:1,000), goat anti mouse or rabbit IgG-HRP (Sigma, Cat# A4416 or A6154, 1:3,000).
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5

Identifying hESC-Derived Oligodendrocyte Precursor Cells

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Analysis of hESC-OPCs was performed by a FACS
Calibur flow cytometer (Becton Dickinson, USA)
with a 488 nm argon laser. Briefly, the cells were
dissociated with accutase (Millipore, USA) at 37˚C
for 5 minutes. Then, cells were washed twice with
PBS by centrifugation at 1500 rpm for 10 minutes.
The cells were fixed with 4% paraformaldehyde
in PBS for 10 minutes. After washing twice with
PBS, the cells were permeabilized with 0.1% triton
X-100 for 15 minutes. Then, cells were washed twice
and triturated with a narrow glass Pasteur pipette
to prepare a single cell suspension. The primary
antibody, rabbit anti-PDGFRα (1:200, Cell Signaling,
USA), was added to the cells and the suspension was
allowed to incubate at 37˚C for 2 hours. A secondary
antibody, goat anti-rabbit IgG-FITC (1:50, Chemicon,
USA), was added to the cells, after which they were
incubated at 37˚C for 45 minutes. The negative
control was the sample without primary antibodies.
Analysis of annexin V/PI staining by flow cytometry
was performed as previously described. A forward
and side scatter gate was used to select target cells
from the aggregates. We calculated a total of 10000
events for each sample with data analysis by WinMDI
2.9 software. Green fluorescence was detected by the
FL1-H detector and displayed in the histogram.
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6

Immunohistochemistry of Cultured Cells and Brain Slices

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Cultured cells or brain slices (30 μm) were fixed with 4% paraformaldehyde followed by three washes in PBS and permeabilized with 0.1% Triton X-100 for 10 min (except for O4, O1 immunostainning) then blocked in 10% goat serum (Invitrogen Corp. USA) for 1 h following incubation with the primary antibody overnight at 4 °C. Primary antibodies were diluted in blocking solutions as follows: mouse anti-MBP (Biolegend, USA; 1:500), mouse anti-APC, CC1 clone (Millipore, USA; 1:500), mouse anti-O4 (R&D Systems Inc, USA, 1:800), mouse anti-O1 (R&D Systems Inc, USA, 1:800), rabbit anti-PDGFRα (Cell Signalling Technology, USA; 1:500), rabbit anti-glial fibrillary acidic protein (GFAP, Biolegend, USA; 1:500) mouse anti-BrdU (Sigma St Louis, USA; 1:500). The tissue or cells were then washed with PBS and incubate in Alexa Flour-conjugated secondary antibodies (Invitrogen Corp. USA; 1:500) for 1 h. Images were obtained using Olympus photomicroscope and analyzed using Image-Pro plus 6.0 software.
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7

Western Blot Analysis of SMC Proteins

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SMCs were lysed in RIPA buffer containing protease inhibitors (50 mM Tris, 150 mM NaCl, 1% Nonidet P-40, 0.1% sodium dodecyl sulfate, and 10 μg/ml aprotinin). Protein concentrations of cell lysates were determined using a Bio-Rad DC™ Protein Assay kit. Approximately 15–30 μg of proteins from each sample were separated on 4–20% Mini-PROTEAN TGX precast gels (Bio-Rad) and transferred to a PVDF membrane. Proteins of interest were detected by immunoblotting using the following primary antibodies and dilution ratios: Rabbit anti-BRD4 (1:1000) from Abcam (ab128874), rabbit anti-PDGFRα (1:1000) from Cell Signaling technology (3164 s), rabbit anti-PDGFRβ (1:200) from Santa Cruz (sc-432) and mouse anti-β-actin from Sigma-Aldrich. After incubation of the blots with HRP-conjugated secondary antibodies (1:3000 for goat anti-rabbit or 1:10,000 for goat anti-mouse, Bio-Rad), specific protein bands on the blots were visualized by applying enhanced chemiluminescence reagents (Pierce) and then recorded with a LAS-4000 Mini imager (GE, Piscataway NJ). Band intensity was quantified using ImageJ.
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8

Immunostaining and Cell Counting Protocol

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Immunostaining was performed in paraffin sections according to the standard protocols. In brief, samples were deparaffinized and rehydrated, followed by antigen retrieval in 10 mM sodium citrate. Blocking and staining were performed in antibody diluent with background-reducing components (Dako). Sections were incubated with rat anti-BrdU (Abcam, #ab6326, 1:500) and rabbit anti-Pdgfrα (Cell Signaling Technology, #3174, 1:500) antibodies overnight at 4°C, followed by incubation with the corresponding secondary antibodies goat anti-rat Alexa Fluor 594 and goat anti-rabbit Alexa Fluor 488 (Thermo Fisher Scientific, both used at 1:500), respectively. For HeLa cells overexpressing human wild-type or mutant β-catenin plasmids, cells were seeded in eight-well glass slides (Millipore). After transfection, cells were fixed in 4% PFA at 37°C for 30 min and then washed sequentially with PBS, 0.2% PBST (Phosphate buffered saline with Tween-20), and PBS. Blocking and staining proceeded as described above. Slides were mounted with DAPI (4′,6-diamidino-2-phenylindole) Fluoromount-G mounting media (Southern Biotech) and imaged by fluorescence microscopy (Olympus). Cell counting was achieved using the ImageJ software.
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9

Whole-Liver Proteome Analysis

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Whole-liver lysates were prepared in Triton-X 100 lysis buffer containing protease inhibitors and protein concentrations were quantified using the Bradford method with bovine serum albumin (BSA) as the standard. Resolution by SDS-PAGE was followed by immunoblotting using the following antibodies: rabbit anti-PDGFRα (#3164), rabbit anti-phospho-p44/42 MAPK (#9101), rabbit anti-p44/42 MAPK (#9102), rabbit anti-β actin (#4(a967), all from Cell Signaling (Danvers, MA) and anti-phospho-Smad3 (#ab52903) from Abcam (Cambridge, MA). Epitope-primary antibody complexes were detected using species-specific secondary antibodies conjugated to horseradish peroxidase (HRP) followed by enhanced chemiluminescence (ECL) (Thermo Fisher Scientific Pierce, IL).
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10

Antibody Characterization for Cell Analysis

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The antibodies used were as follows: rat anti-Ki67 (#14-5698-82, Thermo Fisher Scientific, 1:500), rabbit anti-Olig2 (#AB9610, Millipore, 1:400), rat anti-MBP (#MCA409S, Bio-Rad Laboratories, 1:500), mouse anti-CC1 (#ab16794, Abcam, 1:200), goat anti-PDGFRα (#AF1062, R&D Systems, 1:100), rabbit anti-PDGFRα (#3164 S, Cell Signaling Technology, 1:1000), mouse anti-P65 (#6956 S, Cell Signaling Technology, 1:1000), mouse anti-p-P65 (#3036 S, Cell Signaling Technology, 1:1000), mouse anti-Actin (#M1210-2, HUABIO, 1:5000), mouse anti-Tubulin (#M1305-2, HUABIO, 1:5000), mouse anti-RIPK1 (#610458, BD, 1:1000), rabbit anti-p-RIPK1 (#65746, Cell Signaling Technology, 1:1000). Secondary antibodies: CyTM3 affinipure donkey anti-rat IgG (H + L) (#712-165-153, 1:400), CyTM3 affinipure donkey anti-mouse IgG (H + L) (#715-165-151, 1:400), Alexa Fluor 488 affinipure donkey anti-rabbit IgG (H + L) (#711-545-152, 1:400) and Alexa Fluor 488 affinipure donkey anti-goat IgG (H + L) (#705-545-003, 1:400) were purchased from Jackson ImmunoResearch; Goat anti-mouse IgG (H + L) conjugated with HRP (#31430, 1:20000), goat anti-rabbit IgG (H + L) conjugated with HRP (#31,460, 1:20000) were purchased from Thermo Fisher Scientific.
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