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Phenyl methyl silox

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Phenyl methyl silox is a stationary phase used in gas chromatography. It consists of a silica gel substrate with phenyl and methyl functional groups bonded to the surface. This phase provides a balance of polarity and selectivity for the separation of a wide range of organic compounds.

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3 protocols using phenyl methyl silox

1

GC-MS Metabolomics Data Analysis

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Samples were analyzed on an Agilent 7890A/5975C GC-MS system (Agilent Technologies Inc., CA, USA) employing a HP-5 MS capillary column coated with 5% phenyl methyl silox (Agilent J & W Scientific, Folsom, CA, USA). The obtained GC/MS raw data in [D] format were converted to mzXML format using msConvert (ProteoWizard tool) and subsequently preprocessed, cleaned, deconvoluted and aligned using the Automated Mass Spectral Deconvolution and Identification System (AMDIS, National Institute of Standards and Technology, USA) interface to match against the freely available Mass Spectral (MS) and Retention Time Index (RI) (MSRI) library at the Golm Metabolome Database. Metabolites were then identified by comparison to the National Institute of Standards and Technology Mass Spectral Reference Library 2011 (NIST11/2011; National Institute of Standards and Technology, USA). Following log transformation and imputation with minimum observed values for each compound, the data were analyzed using one-way analysis of variance (ANOVA).
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2

Fatty Acid Profiling of Microbial Biomass

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After 8 days of fermentation, mycelia in the fermentation broth were collected. The fatty acid in cell membrane of the mycelia was extracted, purified and methylated according to the method described by Wang et al. (2013 (link)). After that, the sample dissolved in the n-hexane was collected for GC–MS analysis, using an Agilent 6890 GC (Agilent, Santa Clara, CA, USA) coupled to an Agilent 5973 mass selective detector (MSD) (Agilent, Santa Clara, CA, USA), equipped with a HP-5MS column (5% Phenyl Methyl Silox, 30 m–0.25 mm id 0.25 μm film thickness, Agilent, Santa Clara, CA, USA). The front injection was 250 °C with a split ratio of 70:1. Helium gas (purity of 99.9999%, Foshan, China) was used as the carrier gas at a flow rate of 50 mL/min. The oven temperature program was as follows: 80 °C for 2 min, then raised to 150 °C at a rate of 10 °C/min, and then further to 230 °C at a rate of 3 °C/min, keeping at 230 °C for 5 min. The electron impact energy was 70 eV, and the ion source temperature was set at 230 °C.
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3

GC-MS Analysis of Organic Compounds

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Samples were analyzed with an Agilent Gas Chromatography Mass Spectrometer (7890A/5975C GC-MS System, Agilent, CA, USA). The GC system employed a HP-5MS capillary column coated with 5% phenyl methyl silox (Agilent J & W Scientific, Folsom, CA, USA). Samples (1 μL) were injected at a split ratio of 20:1. As a carrier gas, helium was set to a constant flow rate of 1.0 mL/min. The temperatures were set to 280°C (injection), 250°C (transfer line) and 150°C (ion source), respectively. The initial temperature program was set at 2 min of isothermal heating at 70°C and then increased to 300°C at a rate of 10°C/min. The final temperature was maintained for 5 min. Electron impact ionization (70 eV) in a full scan mode with an m/z range of 35-780 was used for data acquisition.
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