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7 protocols using cd68 fa 11

1

Immunostaining Protocol for Cellular Markers

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Example 8

Reagents. Antibodies used: Ki67 and keratin 6 (NovoCastra); PCNA (PC10) and αSMA (alpha-SM1) (Santa Cruz Biotechnology); CD31 (BD Pharmingen); CD68 (FA-11) (Biolegend); F4/80 (AbD Serotec); cANGPTL4: monoclonal antibodies against the C-terminal mouse (190-410 amino acids) of ANGPTL4 were produced by ProSci, respectively; goat anti-rabbit and anti-mouse IgG-HRP (Santa Cruz Biotechnology); Alexa Fluor 488 or 594 goat anti-mouse IgG, anti-rat IgG and anti-rabbit IgG (Molecular probes). DAB peroxidase substrate kit (Vector Laboratories). Unless mentioned otherwise, all chemicals were from Sigma-Aldrich and molecular biology enzymes from Fermentas. All oligonucleotides were synthesized by Sigma-Proligo.

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2

Alveolar Co-Culture Receptor Expression

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In our in vitro alveolar co-culture model, we examined the surface expression of variety of scavenger/integrin receptors in each cell type via flow cytometry: MERTK (2B10C42; biolegend), TIM4 (RMT4-54; biolegend), Alpha V Beta III (2C9.G2; Biolegend), Alpha V Beta V (RMV-7; Biolegend), Macrophage Scavenger Receptor 1 (REA148; Miltenyi), MARCO, CD36 (HM36; Biolegend); CD68 (FA-11; Biolegend).
In separate experiments, to assess mechanism of MVs internalization, we pre-incubated the cells in the alveolar co-culture model with 2µM Cytochalasin D or 0.25mM Dynasore prior to treatment with DiD-labeled RAW MVs. DiD fluorescence was then assessed in these cells as described above.
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3

Antibody Panel for Immunohistochemistry

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Example 8

Reagents.

Antibodies used: Ki67 and keratin 6 (NovoCastra); PCNA (PC10) and αSMA (alpha-SM1) (Santa Cruz Biotechnology); CD31 (BD Pharmingen); CD68 (FA-11) (Biolegend); F4/80 (AbD Serotec); cANGPTL4: monoclonal antibodies against the C-terminal mouse (190-410 amino acids) of ANGPTL4 were produced by ProSci, respectively; goat anti-rabbit and anti-mouse IgG-HRP (Santa Cruz Biotechnology); Alexa Fluor 488 or 594 goat anti-mouse IgG, anti-rat IgG and anti-rabbit IgG (Molecular probes). DAB peroxidase substrate kit (Vector Laboratories). Unless mentioned otherwise, all chemicals were from Sigma-Aldrich and molecular biology enzymes from Fermentas. All oligonucleotides were synthesized by Sigma-Proligo.

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4

Lung Leukocyte Isolation and Flow Cytometry

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Single cell suspensions of leukocytes were prepared from whole lungs by collagenase digestion for flow cytometry as described previously13 (link). Briefly, each minced lung was incubated in 15 ml of complete media with 1 mg/ml collagenase (Boehringer Mannheim Biochemical, Chicago, IL), and 17 U/ml DNase I (Sigma-Aldrich, St. Louis, MO) for 30 minutes at 37°C. The digested tissue was drawn through the bore of a 10-ml syringe repeatedly, and filtered through 100 µm mesh. Cells were stimulated with PMA (0.05 mg/ml; Sigma-Aldrich, St. Louis, MO) and ionomycin (0.75 mg/ml; Sigma-Aldrich, St. Louis, MO) for 4 h in the presence of GolgiStop protein transport inhibitor (BD Pharmingen, San Jose, CA) before intracellular cytokine staining. An aliquot of 1 × 106 cells was first blocked by anti-CD16/CD32 (Fc block; BD Pharmingen, San Jose, CA) antibodies and then stained using fluorochrome-conjugated antibodies against CD45, CD4, IL-17A, IL-4 or IFN-γ (BD Pharmingen, San Jose, CA). For characterization of lung APCs, flow cytometry was performed using antibodies specific for CD11c (N418), CD103 (2E7), I-Ab (AF6-120.1), and CD68 (FA-11), all from BioLegend (San Diego, CA); CD11b (M1/70, BD Pharmingen); and Ly6C (HK1.4) and F4/80 (BM8) from eBioscience (San Diego, CA). The FITC channel was used to detect autofluorescence of alveolar macrophages.
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5

Comprehensive Murine Immune Cell Analysis

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Composition of murine immune cells was analyzed using the following antibodies: CD3 (145-2C11; BioLegend), CD19 (6D5; BioLegend), CD20 (SA275A11; BioLegend), CD11b (M1/70; BioLegend), CD11c (N418; BioLegend), CD45 (30-F11; BioLegend), Ly6C (HK1.4; BioLegend) and Ly6G (1A8: BioLegend). B cell maturation was analyzed using the following antibodies: CD19 (6D5; BioLegend), CD21 (7G6; BD Bioscience), CD23 (B3B4; BD Bioscience), CD93 (AA4.1; BioLegend), CD45R/B220 (RA3-6B2; BioLegend), IgD (11-26c.2a; BioLegend) and IgM (AF6-78; BD Bioscience). Monocyte, macrophage and microglia activation, differentiation and molecules involved in antigen presentation were determined using: CD40 (3/23; BD Bioscience), CD68 (FA-11; BioLegend), CD69 (H1.2F3; BioLegend), CD80 (16-10A1; BioLegend), CD86 (GL-1; BioLegend), MHCII (AF6-120.1; BioLegend) and PD-L1 (MIH5; eBioscience). Fc receptors were blocked using monoclonal antibody specific for CD16/ CD32 (93; BioLegend). Dead cells were stained with a fixable viability kit (BioLegend). Samples were acquired on a BD LSR Fortessa (BD Bioscience). All data evaluation was performed using FlowJo software (FlowJo LLC, Ashland, USA).
Intracellular proteins were analyzed using the BD PhosFlow protocol and analyzed using the following antibodies: BTK (53/BTK; BD Bioscience), pBTK (N35-86, BD Bioscience), iNOS (W16030C, Biolegend) Arg1 (A1exF5, eBioscience).
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6

Multiparametric Immunophenotyping of Immune Cells

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Human PBMC were stained for CD19 (HIB19; BioLegend), CD14 (M5E2; BD Bioscience) and MHC class II (G46-6; BD Bioscience). Composition of murine immune cells was analysed using the following antibodies: CD3 (145-2C11; BioLegend), CD19 (6D5; BioLegend), CD20 (SA275A11; BioLegend), CD11b (M1/70; BioLegend), CD11c (N418; BioLegend), CD45 (30-F11; BioLegend), Ly6C (HK1.4; BioLegend) and Ly6G (1A8: BioLegend). B cell maturation was analysed using the following antibodies: CD19 (6D5; BioLegend), CD21 (7G6; BD Bioscience), CD23 (B3B4; BD Bioscience), CD93 (AA4.1; BioLegend), CD45R/B220 (RA3-6B2; BioLegend), IgD (11-26c.2a; BioLegend) and IgM (AF6-78; BD Bioscience). Monocyte, macrophage and microglia activation, differentiation and molecules involved in antigen presentation were determined using: CD40 (3/23; BD Bioscience), CD68 (FA-11; BioLegend), CD69 (H1.2F3; BioLegend), CD80 (16-10A1; BioLegend), CD86 (GL-1; BioLegend), MHCII (AF6-120.1; BioLegend) and PD-L1 (MIH5; eBioscience). Fc receptors were blocked using monoclonal antibody specific for murine or human CD16/ CD32 (Murine TruStain FcX; Human TruStain FcX; BioLegend), respectively. Dead cells were stained with the Zombie Fixable Viability™ Kit (BioLegend). Samples were acquired on a BD LSR Fortessa (BD Bioscience). All data evaluation was performed using FlowJo software (FlowJo LLC, Ashland, USA).
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7

Lung Leukocyte Isolation and Flow Cytometry

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Single cell suspensions of leukocytes were prepared from whole lungs by collagenase digestion for flow cytometry as described previously13 (link). Briefly, each minced lung was incubated in 15 ml of complete media with 1 mg/ml collagenase (Boehringer Mannheim Biochemical, Chicago, IL), and 17 U/ml DNase I (Sigma-Aldrich, St. Louis, MO) for 30 minutes at 37°C. The digested tissue was drawn through the bore of a 10-ml syringe repeatedly, and filtered through 100 µm mesh. Cells were stimulated with PMA (0.05 mg/ml; Sigma-Aldrich, St. Louis, MO) and ionomycin (0.75 mg/ml; Sigma-Aldrich, St. Louis, MO) for 4 h in the presence of GolgiStop protein transport inhibitor (BD Pharmingen, San Jose, CA) before intracellular cytokine staining. An aliquot of 1 × 106 cells was first blocked by anti-CD16/CD32 (Fc block; BD Pharmingen, San Jose, CA) antibodies and then stained using fluorochrome-conjugated antibodies against CD45, CD4, IL-17A, IL-4 or IFN-γ (BD Pharmingen, San Jose, CA). For characterization of lung APCs, flow cytometry was performed using antibodies specific for CD11c (N418), CD103 (2E7), I-Ab (AF6-120.1), and CD68 (FA-11), all from BioLegend (San Diego, CA); CD11b (M1/70, BD Pharmingen); and Ly6C (HK1.4) and F4/80 (BM8) from eBioscience (San Diego, CA). The FITC channel was used to detect autofluorescence of alveolar macrophages.
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