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4 protocols using ephb2

1

Immunohistochemical Staining of EPHB2 and CD206

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IF assay was implemented according to the methods described previously (26 (link)). The primary antibodies included EPHB2 (1:100, 2D12C6, Santa Cruz Biotechnology) and CD206 (1:100,24595, Cell Signaling Technology).
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2

Histopathological and Immunohistochemical Analysis of Mouse Adenocarcinoma

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Part of the tumor masses and normal colon mucosae were analyzed according to standard histochemical procedures. Mouse adenocarcinoma were diagnosed according to the histopathological criteria described by Boivin et al. (22 (link)).
Immunohistochemistry was performed on 4-µm-thick FFPE tissue sections after antigen retrieval with sodium citrate buffer. Goat anti-mouse Krt20 and Lgr5, rabbit anti-mouse EphA2 and EphB2 (Santa Cruz Biotechnology, Santa Cruz, CA, 1:50) were used. The immunostained slides were observed under a microscope, and the image data were analysed using NIS FreeWare 2.10 software (Nikon, Japan).
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3

BCR-ABL Signaling Pathway Modulation

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Imatinib mesylate and ponatinib hydrochloride were obtained from NCE Biomedical Co., Ltd. ApoE-mimetic peptide COG112 (acetyl-LRVRLASHLRKLRKRLL-amide) was synthesized by ChinaPeptides Co., Ltd and purified to > 95% purity. Antibodies to BCR-ABL (b2a2 Junction Specific) (#3908), p-Abl (Tyr245) (#2861) and PP2Ac (#2038) were from CST; antibodies to p-PP2Ac (Y307) (#sc-12615-R), EphB2 (#sc-1763), PDGFRα (#sc-338), β-actin (#sc-47778) and β-tubulin (#sc-9104) were from Santa Cruz; antibodies to SET (#ab1183) was from Abcam. 17-DMAG was acquired from Selleck Chemicals. Okadaic acid (OA) and other reagents and solvents were analytical grade and from Sigma-Aldrich unless noted otherwise.
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4

Analyzing EPHB2, EPHB4, and EPZH2 in Cell Lines

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Whole cell extracts of cell lines were used in Western blots for EPHB2 (Santa Cruz, Dallas, TX, USA, #sc-130752), EPHB4 (Santa Cruz, #sc-5536), and GAPDH (Santa Cruz, #sc-51631). Nuclear extracts for Co-IP were prepared and diluted using the NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo Fisher Scientific, #78835) and RIPA buffer (Life Technologies, Grand Island, NY, USA, 89900). The IP was incubated with JMJD3 antibody (Abcam, #ab38113), Notch intracellular domain (NICD) antibody (Abcam, # ab8925), or EZH2 antibody (Abcam, #ab186006) overnight at 4°C, the protein G Dyna-beads (Life Technologies, 10009D) were added and incubated at 4°C for 3 hours. After washing with RIPA buffer three times, the beads were resuspended in reducing SDS gel loading buffer. The gray-scale assay for each blots was analyzed using MultiGauge V3.0 software (Fujifilm, Tokyo, Japan), and number under each blots presents the relative level compared with the vector or Scrss.
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