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First strand cdna synthesis kit

Manufactured by Yeasen
Sourced in China

The First Strand cDNA Synthesis Kit is a laboratory reagent used for the reverse transcription of RNA to complementary DNA (cDNA). It contains the necessary components, such as reverse transcriptase enzyme, buffer, and primers, to facilitate the conversion of RNA into single-stranded cDNA molecules.

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20 protocols using first strand cdna synthesis kit

1

Isolation and Analysis of circRNA

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Tissues or cells were lysed in Trizol reagent (Solarbio) for the isolation of total RNA. For extraction of circRNA, the RNA was further treated by RNase R (Geneseed, Guangzhou, China). The complementary DNA (cDNA) was generated by reverse transcription using the First‐Strand cDNA Synthesis kit (Yeasen, Shanghai, China) and then used for qRT‐PCR assay after the mixture with SYBR (Thermo Fisher) and specific primers (Sangon, Shanghai, China). The primers were listed as: circCDR1as (Forward, 5′‐CCCAGTCTTCCATCAACTGG‐3′; Reverse, 5′‐ACCTTGACACAGGTGCCATC‐3′), SOX5 (Forward, 5′‐AGGTTTGGACTCACTTGACAGG‐3′; Reverse, 5′‐GTGAGGCTTGTTGGGAAAACTC‐3′) and miR‐219a‐5p (Forward, 5′‐TCTACAGTGCACGTGTCTCCAGT‐3′; Reverse, 5′‐CTCTCATTTGCTATATTCA‐3′). The glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) (Forward, 5′‐CAGCCTCAAGATCATCAGCA‐3′; Reverse, 5′‐GTCTTCTGGGTGGCAGTGAT‐3′) and U6 (Forward, 5′‐CTCGCTTCGGCAGCACA‐3′; Reverse, 5′‐AACGCTTCACGAATTTGCGT‐3′) were regarded as internal controls. The 2−ΔΔCt method was used to calculate the relative gene expression level.24
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2

Quantitative RNA Expression Analysis

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Total RNA was extracted from frozen tissues and cells using TRIzol (Invitrogen, Eugene, OR, USA), and cDNA synthesis was performed using the First Strand cDNA Synthesis kit (Yeasen, Shanghai, China) according to the manufacturer's instructions. qRT-PCR analysis was conducted using the SYBR Green Supermix kit (Yeasen) on the StepOnePlus™ Real-Time PCR System (Applied Biosystems, Waltham, Massachusetts, USA) as described in the manufacturer's instructions. Relative mRNA expression levels were calculated using the 2−ΔΔCT relative quantification method using β-actin as a control. The primers are shown in Supplementary Table 1.
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3

Quantifying Gene Expression in Chondrocytes

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RT-PCR was used to quantify the expression of related genes. The procedure was performed as previously described [47 (link)]. Total RNA was isolated from chondrocytes using a total RNA extraction kit (Toyobo, Japan). cDNA was synthesized from total RNA using a first Strand cDNA Synthesis Kit (Yeasen, China) and then amplified using SYBR Green Real-time PCR Master Mix (Yeasen, China). Each cDNA sample was assayed in triplicate. Sequences of the primers for the genes of interest are as follows: ADAMTS5 (F) 5′-GCCAGGC GGATGTGGTTCTCAA-3′, (R) 5′-ATG CGGCTCGAGTGGGCGCCCTTGT-3′. MMP3 (F) 5′-GAAACGGGACAAGTCTGTGGAG-3′, (R) 5′-ATGA AAATGAAGGGTCTTCCGGTCC-3′. MMP13 (F) 5′-GCTGGACTCCCTGTTG-3′, (R) 5′-TCGGAGCCTGT CAACT-3′. Collagen II (F) 5′-GGGAATGTCCTCTGC GATGAC-3′, (R) 5′-GAAGGGGATCTCGGGGTTG-3′. GAPDH (F) 5′-AACATCAAATGGGGTGAGGCC-3′, (R): 5′-GTTGTCATGGATGACCTTGGC-3′.
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4

Multimodal Protein Expression Analysis

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For qRT-PCR, total RNA was isolated with TRIzol reagent (Invitrogen), and cDNA was synthesized using the First Strand cDNA Synthesis kit (Yeasen). For the quantitative real-time PCR (qRT-PCR), the SYBR Green Supermix kit (Yeasen) was used on the StepOnePlus™ Real-Time PCR System (Applied Biosystems). The primer sequences for qRT-PCR were as follows:
Western blotting procedures were described in our previous study (18 (link)). The primary antibodies used were MISP (1:1,000, cat.no. 26338-1-AP, Proteintech); ZO-1 (1:1,000, cat. no. 8193P; Cell Signaling Technology); ZEB1 (1:1,000, cat. no. 70512S; Cell Signaling Technology), N-cadherin (1:1,000, cat. no. 13116T; Cell Signaling Technology); vimentin (1:1,000, cat. no. 3932S; Cell Signaling Technology); E-cadherin (1:1,000, cat.no. 20874-1-AP, Proteintech.), Slug (1:1,000, cat. no. 9585T; Cell Signaling Technology, Inc.) and β-actin (1:2,000, cat.no.GB12001, Servicebio.), GAPDH (1:2,000, cat.no. GB12002, Servicebio.); HRP-linked secondary antibodies (1:5,000; cat. no. 7074P2 and 7076S; Cell Signaling Technology, Inc.).
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5

RNA Isolation and cDNA Synthesis

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According to the manufacturer’s instructions, total RNA was isolated from post-infected and non-infected cells via TRNzol Universal Reagent kit (TIANGEN, Beijing, China). Then, RNA was inverse transcribed to cDNA with the first strand cDNA synthesis kit (Cat No.11119-11141; Yeasen, Shanghai, China) and reverse transcription PCR (RT-PCR).
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6

Immunoblotting and qRT-PCR Evaluation

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Immunoblotting procedures were described in our previous study.20 Cytoskeletal fractions were obtained using a ProteoExtract Subcellular Proteome Extraction Kit (Merck Millipore) according to the manufacturer's instruction. Primary antibodies are shown in Table S1. Immunoreactivity was detected by the Enhanced Chemiluminescence kit (GE Healthcare), and visualization was performed with the G BoxChemic XL system (Syngene). GAPDH was used as an internal reference control for the relative protein expression levels using the Quantity One software (Bio‐Rad). For qRT‐PCR, total RNA was isolated with TRIzol reagent (Invitrogen), and cDNA was synthesized with the First Strand cDNA Synthesis kit (Yeasen), following the manufacturer's instructions. For quantitative reverse transcriptase‐PCR, SYBR Green Supermix kit (Yeasen) was used on a StepOnePlus™ Real‐Time PCR System (Applied Biosystems). Primer sequences for qRT‐PCR were as follows: SKA1 forward: ACCCAGAGCTGTGTTAAGGGA, SKA1 reverse: TTGGGAGGCTTCTTT ACGGGT; GAPDH forward: GGTGAAGGTCGGAGTCAACG, GAPDH reverse: TGGGTGGAATCATATTGGAACA. The relative gene expression levels were determined by the comparative CT method (2−ΔΔCT). The results were expressed as relative integrated intensity.
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7

Quantifying mRNA Levels in Infected Cells

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According to the manufacturer’s instructions, total RNA was isolated from postinfected and noninfected cells using the FastPure® Cell Total RNA isolation kit (RC112-01, Vazyme Biotech Co., Ltd., China). RNA was reverse transcribed to cDNA with the First Strand cDNA Synthesis Kit (Cat No. 11,119–11,141; Yeasen, Shanghai, China), and reverse transcription PCR (RT‒PCR) was performed. The total volume of the reaction was 10 µL, and the thermocycler program was as follows: 94 °C for 10 min and 40 cycles of 94 °C for 20 s, 58 °C for 20 s, and 72 °C for 20 s. The relative mRNA levels were calculated using the 2 − ΔΔCt method [24 (link)]. GAPDH was used as an internal control.
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8

Quantification of Gene Expression by qRT-PCR

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The expression of related genes was quantified using qRT-PCR. A total RNA extraction kit was purchased from OMEGA, Britain. A first Strand cDNA Synthesis Kit and SYBR Green Real-time PCR Master Mix were purchased from Yeasen, China. Sequences of the primers for the genes of interest are as follows: MMP3 (F) 5′-GAAACGGGACAAGTCTGTGGAG-3′, (R) 5′-ATGAAAATGAAGGGTCTTCCGG TCC-3′. MMP13 (F) 5′-GCTGGACTCCCTGTTG-3′, (R) 5′-TCGGAGCCTGT CAA CT-3′. COL2A1 (F) 5′-GGGAATGTCCTCTGC GATGAC-3′, (R) 5′-GAAGGGGA TCTCGGGGTTG-3′. GAPDH (F) 5′-AACATCAAATGGGGTGAGGCC-3′, (R): 5′-GTTGTCATGGATGACCTTGGC-3′. GPX4 (F) 5′- GATGGAGCCCATTCCTGAAC C-3′, (R) 5′-CCCTGTACTTATCCAGGCAGA-3′. NRF2 (F) 5′-ACCAAGGGGCAC CATATAAAAG-3′, (R) 5′-CTTCGCCGAGTTGCACTCA-3′. Parkin (F) 5′-TCCTTC GTCCACTGTTTCACA -3′, (R) 5′-GGGCATTGCTCTCAGTCACAT -3′.
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9

Quantitative Analysis of IL-9 and IL-9R mRNA

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Total RNA of DVSMCs was extracted using TRIzol reagent. Complementary DNA (cDNA) samples were synthesized using the First Strand cDNA Synthesis Kit (Yeasen, Shanghai, China) and oligo (dT) primers. The levels of mRNA of the target genes were examined using SYBR Green PCR Master Mix. The following primer pairs were used:
IL-9
Forward: TCA AGATGCTTCTGGCCATG
Reverse: AGGGAATGCCCAAACAGAGA
IL-9R
Forward: CCAGCACAGGGATCACATTG
Reverse: GCCTGTATAACGCTCCTCCT
β-actinForward: AACCATGAGGGAAATCGTGC
Reverse: CAGGATGGCACGAGGAACAT
The 2−ΔΔCt method was used to normalize the transcription to the level of β-actin and to calculate the fold-induction relative to the controls.
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10

RNA Isolation and qPCR Analysis

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Cells were lysed in RNAiso Plus (TaKaRa) and stored at −80°C. Total RNA was extracted following the manufacturer’s instructions. cDNA was synthesized using the First Strand cDNA Synthesis Kit (Yeasen). Quantitative polymerase chain reaction (PCR) was performed using a Light Cycler 480 Instrument II (Roche) with TB Green Premix Ex Taq (TaKaRa). Primers used for quantitative PCR are listed in table S13.
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