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7 protocols using streptavidin fitc

1

Intracellular Labeling of Retinal Cells

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Intracellular injections were performed as described previously (Pérez de Sevilla Müller et al., 2007 (link), Müller et al., 2010a (link), Müller et al., 2010b (link)). tdTomato-expressing cells were visualized with a Zeiss 40X water-immersion objective. Borosilicate glass electrodes (#60200; A-M Systems; Sequim, WA) were pulled and filled at their tips with 0.5% Lucifer Yellow (Sigma-Aldrich) 4% N-(2-aminoethyl)-biotinamide hydrochloride (Neurobiotin; Vector Laboratories, Burlingame, CA), and back-filled with 0.1 M Tris buffer, pH 7.4. Under visual guidance provided by the tdTomato fluorescence, cells were targeted for injection. First, Lucifer Yellow was iontophoresed (−1 nA) into the labeled cells and when its morphology could be visualized, the polarity of the current was reversed (+1 nA) and Neurobiotin was injected for 3 minutes. After the final injection, the retina was kept in the bath solution for at least 30 minutes to allow diffusion of the Neurobiotin. The retinas were fixed in 4% PFA for 10 minutes. Neurobiotin was visualized by incubating injected retinas overnight at 4°C with streptavidin–FITC (1:500; Jackson ImmunoResearch, West Grove, PA) in 0.1 M PB containing 0.3% Triton X-100 (Sigma-Aldrich). Retinas were washed in PB 3 times for a total of 30 minutes and mounted in Vectashield (Vector Laboratories).
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2

Quantifying Surface Integrin Expression

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Integrin α5 (clone 5H10-27(MFR5)) and integrin αV (clone RMV-7) antibodies were purchased from BD Biosciences. Integrin β1 (clone HMβ1-1) was obtained from Biolegend and integrin β3 antibody (clone HMb3-1) from Millipore (MA, US). The secondary antibodies [biotin-SP-conjugated goat α-rat IgG, Rhodamine Red-X-AffiniPure goat α-Armenian hamster IgG(H + L)] and streptavidin-FITC were purchased from Jackson ImmunoResearch (West Grove, PA). For quantification of surface integrin expression, detached fibroblasts were incubated in suspension medium (DMEM containing 0.25% BSA) for 40 min at 37°C. Then, 2 × 105 cells were incubated with appropriate primary antibodies (diluted 1:300) in FACS buffer (5% heat-inactivated FCS, 1% sodium azide in PBS) for 1 hr at 4°C. After washing, secondary antibodies were applied for 1 h at 4°C, then washed again, before samples were analyzed by flow cytometry (LSRII, BD Biosciences).
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3

Intracellular Injection Method for Amacrine Cells

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Intracellular injections were performed as described previously (Pérez de Sevilla Müller et al., 2007 (link), 2010a (link),b (link); Vuong et al., 2015 (link)). Borosilicate glass electrodes (#60200; A-M Systems; Sequim, WA, USA) were pulled and filled at their tips with 0.5% Lucifer Yellow (Sigma–Aldrich) 4% N-(2-aminoethyl)-biotinamide hydrochloride (Neurobiotin; Vector Laboratories, Burlingame, CA, USA), and back-filled with 0.1 M Tris buffer, pH 7.4. In retinal whole mounts, amacrine cell bodies located in the proximal INL at the border of the IPL were targeted for injection. Lucifer Yellow was iontophoresed (−1 nA) into a single cell body and when the bistratified morphology of the AII amacrine cell was recognized, the polarity of the current was reversed (+1 nA) and Neurobiotin was injected for 3 min. The retinas were then fixed in 4% PFA for 10 min and washed for 30 min in 0.1 M PB. Neurobiotin was visualized by incubating the retinas with the injected cells overnight at 4°C with streptavidin–FITC (1:500; Jackson ImmunoResearch, West Grove, PA, USA) in 0.1M PB containing 0.3% Triton X-100 (Sigma–Aldrich). Retinas were washed in PB three times for a total of 30 min. The retinas were subsequently processed for immunohistochemical staining.
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4

Cellular Uptake and Localization of Biotinylated Nanocages

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Cells were seeded onto poly-l-lysine-coated glass cover-slides. For binding experiments, cells were incubated with biotinylated nanocages in DMEM 10% FBS for 1 h at 4 °C, washed in PBS, fixed in 4% paraformaldehyde, and incubated for 5 min with NaBH4. For uptake experiments, cells were incubated with nanocages at 37 °C for different time periods, fixed with 4% paraformaldehyde, and permeabilized for 4 min with Tris/Triton (Tris HCl 0.1 M, Triton 0.1%, pH 7.7). Rabbit polyclonal anti-flotillin-1 antibody (Santa Cruz Biotechnology Inc., Dallas, TX, USA) was used to detect the flotillin-1 protein. Early endosomes were visualized with polyclonal EEA1 antibody (Abcam Inc., Toronto, ON, Canada) and lysosomes with mouse monoclonal anti-LAMP-1 antibody (Abcam Inc., Toronto, ON, Canada). Donkey anti-rabbit IgG and donkey anti-mouse IgG, both Rhodamine Red-X-conjugated AffiniPure (Jackson ImmunoResearch, Cambridgeshire, UK) were used as secondary antibodies [24 (link)]. Biotinylated cages were detected by using streptavidin–FITC (Jackson ImmunoResearch, Cambridgeshire, UK). The nuclei were stained with DAPI (Invitrogen, Carlsbad, CA, USA). Images were obtained with a laser confocal fluorescent microscope Olympus FV1000 at 60× magnification, and the fluorescence signal was evaluated with the IMARIS software. Co-localization events were evaluated as previously described [24 (link)].
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5

Osteocyte Membrane Protein E11/gp38 Antibody Staining

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Antibodies to the osteocyte membrane protein E11/gp38 [22 (link)] (also known as podoplanin) included a hamster monoclonal (gift from
Dr. Andrew Farr, University of Washington, Seattle) and a polyclonal goat antibody against
podoplanin (R&D systems, Pittsburgh, PA). Phalloidin conjugated to Alexa Fluor
488, Texas red or Alexa Fluor 633 was obtained from Molecular Probes/Invitrogen
Corporation (Carlsbad, California) and was used to stain F-actin. The membrane dye
1,1′-dioctadecyl-3,3,3′3′-tetramethylindocarbocyanine perchlorate
(DiI), the nuclear stain 4′-6-Diamidino-2-phenylindole (DAPI) and a Texas red
conjugated 10 kDa lysine-fixable dextran, used to image the lacunocanalicular system, were
all obtained from Invitrogen Corporation. Detection antibodies and reagents used for
immunostaining included Cy3 conjugated anti-hamster and anti-goat antibodies and a
biotinylated anti-hamster antibody used in conjunction with FITC-streptavidin (Jackson
Immunoresearch, Westgrove, PA).
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6

Viral Vector Constructs and Immunohistochemistry

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AAV2-hSyn-hChR2(H134R)-mCherry (titer: 2.9e12), AAV2-hSyn-mCherry (titer: 4.7e12), and AAV2-hSyn-eNpHR3.0-mCherry (1.5e12) were obtained from the University of North Carolina Vector Core with available stock constructs from the laboratory of K. Deisseroth at Stanford University.
C-Fos antibody (1:5000, Cell Signaling Technology Cat# 4384, RRID:AB_2106617) was a rabbit polyclonal antibody raised against a synthetic peptide corresponding to amino acids near the carboxy-terminus of human c-Fos protein. TH antibody (1:250, Millipore Cat# AB152, RRID:AB_390204) was a rabbit polyclonal antibody raised against denatured tyrosine hydroxylase from rat pheochro-mocytoma. NeuN antibody (1:1000, EMD Millipore Cat# MAB377, RRID:AB_2298772) was a mouse monoclonal antibody, clone A60, selected from immunoglobulins formed against purified cell nuclei from mouse brain. Secondary antibodies used were purchased from Jackson Immuno Research (Westgrove, PA): Cy5 Goat anti-rabbit IgG (1:500, Cat# 111-175-144, RRID:AB_2338013), Alexafluor 594 Donkey anti-rabbit IgG (1:500, Cat# 711-585-152, RRID:AB_2340621), Cy5 Goat anti-mouse IgG (1:500, Cat# 115-175-146, RRID:AB_2338713), and FITC streptavidin (1:200, Cat# 016-010-084, RRID:AB_2337236).
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7

Viral Vector Constructs and Immunohistochemistry

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AAV2-hSyn-hChR2(H134R)-mCherry (titer: 2.9e12), AAV2-hSyn-mCherry (titer: 4.7e12), and AAV2-hSyn-eNpHR3.0-mCherry (1.5e12) were obtained from the University of North Carolina Vector Core with available stock constructs from the laboratory of K. Deisseroth at Stanford University.
C-Fos antibody (1:5000, Cell Signaling Technology Cat# 4384, RRID:AB_2106617) was a rabbit polyclonal antibody raised against a synthetic peptide corresponding to amino acids near the carboxy-terminus of human c-Fos protein. TH antibody (1:250, Millipore Cat# AB152, RRID:AB_390204) was a rabbit polyclonal antibody raised against denatured tyrosine hydroxylase from rat pheochro-mocytoma. NeuN antibody (1:1000, EMD Millipore Cat# MAB377, RRID:AB_2298772) was a mouse monoclonal antibody, clone A60, selected from immunoglobulins formed against purified cell nuclei from mouse brain. Secondary antibodies used were purchased from Jackson Immuno Research (Westgrove, PA): Cy5 Goat anti-rabbit IgG (1:500, Cat# 111-175-144, RRID:AB_2338013), Alexafluor 594 Donkey anti-rabbit IgG (1:500, Cat# 711-585-152, RRID:AB_2340621), Cy5 Goat anti-mouse IgG (1:500, Cat# 115-175-146, RRID:AB_2338713), and FITC streptavidin (1:200, Cat# 016-010-084, RRID:AB_2337236).
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