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52 protocols using ab40390

1

Immunostaining of Tissue Sections and Cell Cultures

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Frozen sections were blocked in PBS + 0.1% Triton X-100 (PBT) for 1 h. Primary antibodies were diluted in blocking solution (PBT + 1% BSA + 0.15% glycine) as follows: cleaved-Caspase-3 (casp3, D175, lot 43, rabbit, Cell Signaling Technologies, 1:200 dilution), Mbp (SMI 94R-0100 lot E10172EF, mouse, Covance, 1:1000 dilution), GFP (A11122, lot 1891900, rabbit, Invitrogen, 1:1000 dilution), CD45 (14-045-185 C30F11, Rat, Invitrogen, 1:100 dilution) and F4/80, CD11b, CD68 cocktail (MCA497, MCA74G, MCA1957, Rat, Bio-Rad, 1:200 dilution) and incubation performed overnight at 4 °C. After several washes, slides were incubated with secondary antibody (anti-rabbit alexaFluor555, anti-mouse alexaFluor488, anti-rat Cy3 or anti-rabbit alexaFluor488, Invitrogen, 1:500 dilution each) for 2 h before final washing. For dorsal root ganglia (DRGs) cultures, cells were fixed in 4% PFA for 10 min and immunostained using the same procedure with TuJ1 (MMS-435P, lot TU17044, mouse, Eurogentec, 1:1000 dilution) and Mbp (ab40390, Rabbit, Abcam, 1:200 dilution). Secondary antibodies used were as follows: anti-mouse alexaFluor 488 and anti-rabbit alexaFluor 555 (Invitrogen, 1:500 dilution each). Preparations were then mounted using Vectashield containing DAPI (Vector laboratories) and observed using Spinning Disk from Zeiss.
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2

Analyzing MBP Expression in BACHD Rat Brains

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To access protein expression level of MBP in BACHD rats, western blot was applied using striatal brain lysis of male BACHD TG5 rats and WT controls at 3 months of age (n = 3). The striata were stored at −80 °C after dissection and were homogenized with a tissue homogenizer at a speed of 30 000 rpm for 30 s in 10 volumes (w/v) modified RIPA buffer (50 mm Tris pH 7.5, 150 mm NaCl, 1% NP40, 0.5% deoxycholate, 0.1% SDS) with Complete Protease Inhibitor Cocktail tablets (Roche, Germany). After a further 5-min sonication with bath sonicator for shearing genomic DNA, the lysates were centrifuged at 4 °C for 15 min at 16 200g, and the supernatant was used for western blot analysis (52 (link)). The blot was probed with polyclonal rat antibody recognizing rat MBP (1: 5000, ab40390, abcam, USA) followed by incubation in the HRP-conjugated secondary antibody (1:10 000, ab191866, abcam, Cambridge, MA, USA). Finally, blots were developed with ECL Western Blotting Detection Reagent (RPN2134, Amersham Biosciences, Germany) and followed by visualization on X-ray film (AGFA, Germany).
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3

Transplantation of mCherry-Labeled OPCs in Shiverer Mice

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Newborn double-homozygous Shi (MbpShi/MbpShi) mice (The Jackson Laboratory, Bar Harbor, ME, United States) were injected with dissociated single OPCs. The protocol followed previous work with minor modifications (Zhang et al., 2019 (link)). Briefly, to generate the lentivirus expression of mCherry protein, the backbone of pCDH-CMV-MCS-EF1-copGFP (System Biosciences) was used. Subsequently, the copGFP was replaced by mCherry and puromycin was inserted into the multiple clone sites. The positive plasmid was confirmed by sequencing and using for lentivirus packaging. OPCs were transfected with lentiviral expressed mcherry, and positive cells were selected by puromycin. Then, mcherry OPCs+ were transplanted bilaterally in the corpus callosum of 1 week-old Shi mice (2.0 × 105 cell/mice). PBS-treated age-sex-, strain-matched mice, and sham control mice were used. After 5 weeks from the treatment, mice were anesthetized, and brains were isolated and fixed with 4% paraformaldehyde and cryoprotected using 30% sucrose. CNS coronal sections were stained with myelin basic protein (MBP) antibody (ab40390, Abcam) for evaluating the differentiation process of mcherry OPCs+. Tremor (Trembling time/total time) was analyzed for evaluating disease development. Kaplan-Meier analysis was used to assess the survival rate as described (Shinkai et al., 1992 (link)).
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4

Myelin Basic Protein Immunofluorescence

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Animals were euthanized with isoflurane overdose. Brains were removed and fixed in 4% paraformaldehyde solution in 0.1 M sodium phosphate buffer PBS (pH 7.3) overnight then immersed in 20% sucrose for 1 day and then 30% sucrose for 3 days. Brains were then frozen in optimal cutting temperature compound (O.C.T., Sakura Finetek, Torrance, CA). 20μm sections were in the coronal plane. Slides were incubated with Anti-Myelin Basic Protein antibody polyclonal antibody (ab40390, Abcam) at 1:200 followed by secondary antibody incubation in Alexa-594 goat anti-rabbit at 1:500 (Invitrogen, Grand Island, NY).
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5

Immunostaining of Subcutaneous Innervation

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Tissue samples were fixed in 4% paraformaldehyde and embedded in paraffin, then cut into sections (6 μm thick). One section was chosen from every ten sections for a total of three cross-sections per animal, which were used for immunostaining. The primary antibodies used were protein gene product 9.5 (PGP9.5, 1:1,000; AB1761-I, MilliporeSigma, Burlington, MA, USA), myelin basic protein (MBP, 1:200; ab40390, Abcam, Cambridge, MA, USA), hypophosphorylated neurofilament H (NF200, 1:100; ab8135, Abcam), normal rabbit IgG (1:300, ab172730, Abcam) was used as a negative control. All primary antibodies were diluted in 3% BSA in PBS. Sections were counterstained with DAPI (1:5000, D1306, Thermo Fisher Scientific).
For subcutaneous innervations, every PGP9.5-positive nerve fibre in the dermis within a 50 μm radius from the epidermal/dermal junction was measured, and the number of PGP9.5-immunoreactive nerve fibres with a cross-sectional area of ≤ 20 μm2 was counted. Data are presented as nerve fibre density calculated based on a published formula [25 (link)].
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6

Immunohistochemical Analysis of Cerebellar Myelin

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Entire brains were dehydrated with sucrose (15%) for 3 h and sucrose (30%) for 24 h, embedded in Tissue-Tek (OCT, Sakura) and sliced in a cryostat (Leica Biosystems) to obtain 20 μm coronal sections only of the cerebellum. Slices were hydrated with PBS for 5 min and immersed three times in PBST containing (0.5%) Triton X-100 and (0.01%) Tween 20 for 10 min; slices were washed twice with PBS for 5 min. Slices were incubated overnight at 4 °C with a myelin basic protein (MBP) primary antibody AB40390 (Abcam) diluted (1:100) in PBS. Slices were immersed in an anti-rabbit Alexa-594 secondary antibody diluted (1:1000) for 2 h and washed in PBS and PBST. Slices were contra-stained with DAPI (1:4,000 dilution) for 5 min and mounted in Vectashield (Vector) medium. The images were acquired using a Carl Zeiss 780 LSM confocal microscope. Confocal micrographs were acquired at 0.20 μm intervals of 1,024 × 1,024-pixel resolution and further processed and edited with the Image J (J64) and Amira (Amira 6.4.0 AmiraVR (XScreen) 6.2.4) software, respectively. Illustrative 3D video from Fig. 3 were obtained with the Amira software (Supplementary Video S6).
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7

Evaluation of Nerve Transplant Integration

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To assess the transplantation site that forms nodular structures, the fixed proximal nerve portions were cut into 30 μm longitudinal frozen sections. To evaluate CNS cells in the transplant environment and the survival of the engrafted neurons, we used the following stains: Alexa Fluor 488 conjugated anti-Tuj1 antibody (801203, 1:400, Biolegend), Cy3 conjugated anti-GFAP antibody (ab49874, 1:400, Abcam, Cambridge, England), anti-MBP antibody (ab40390, 1:200, Abcam), anti-ChAT antibody (AB144P, 1:50 Sigma-Aldrich), and Hoechst (33342, 1:1000, Dojindo) for nuclear staining. Donkey Anti-Rabbit IgG H & L (Alexa Fluor 647) (ab 150075, 1:200, Abcam) for anti-MBP antibody and Donkey Anti-Goat IgG H & L (Alexa Fluor 594) pre-absorbed (ab 150136, 1:200, Abcam) for anti-ChAT antibody were used as secondary antibodies. We also stained the naive spine and common peroneal nerve with the same antibodies for comparison. We observed these sections using a confocal laser microscopy system (A1Rsi and Ti-E, Nikon, Tokyo, Japan).
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8

Western Blot Analysis of BACE1 and Tau Pathology

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Neuro-2a cells were harvested at day 3 after incubation with Gal-NP@Cy5-siRNA and control vectors. For sufficient siBACE1 verification, mouse brain tissues were taken from Balb/c mice after two siRNA injections. In therapeutic evaluation, mouse brain tissues were taken 1 day after completion of behavioral assessments. Animals were anesthetized and transcardially perfused with saline. Tissue (whole hippocampus and cortex) and cells were homogenized in radioimmunoprecipitation assay lysis buffer with a proteinase and phosphorylase inhibitor cocktail (Thermo Fisher Scientific) and centrifuged for 15 min (12,000 rpm, 4°C). The protein concentration of the supernatant was determined using the BCA Protein Assay Kit (Beyotime, China). Standard Western blot electrophoresis was then performed, with proteins transferred onto polyvinylidene difluoride membranes (Millipore 0.22 μm) and immunoblotted. Primary antibody BACE1 (Abcam, AB183612), p-tau (Abcam, AB151559), MBP (Abcam, AB40390), β-actin (Abcam, AB8226), or GAPDH (Abcam, AB181602) and mouse or rabbit secondary antibody (LI-COR IRDye 800CW) were used. Data quantification was performed by ImageJ software.
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9

Comprehensive Immunolabeling Protocol

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Primary antibodies against VIP (Abcam, ab78536), PACAP (Abcam, ab216627), VPAC1 (Santa Cruz, sc-30019; Abcam, ab123517), VPAC2 (Santa Cruz, sc-30020), PAC1 (Santa Cruz, sc-30018), myelin protein zero (Mpz) (Sigma, SAB2500665), myelin basic protein (Mbp) (Abcam, ab40390), neurofilament heavy chain (NF) (Abcam, ab4680), F4/80 (Abcam, ab6640), and GAPDH (EMD Millipore, MAB374) were used. Hoechst and species specific secondary antibodies conjugated with Alexa Fluor 488 or 568 dyes were purchased from Invitrogen. Horseradish peroxidase conjugated secondary antibodies for western blotting were purchased from Sigma.
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10

Immunohistochemical Analysis of Brain

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Following cardiac saline perfusion, brain hemispheres were immersed in 4% paraformaldehyde overnight; cryoprotected in 30% sucrose; embedded in Optimal Cutting Temperature medium; and sliced sagittally in 18 μm thick sections on a cryostat. Sections were stored at −80 °C. Tissue sections were permeabilized with 1% NP-40 and blocked with 5% bovine serum albumin. Primary antibodies to Iba1 (ionized calcium binding adaptor molecule 1 (1:500, 019-19741, Wako Pure Chemical Industries, AB839504) or MBP (myelin basic protein, 1:1000, ab40390, Abcam, AB1141521) were added overnight at 4 °C. Immunofluorescence was visualize d by Alex Fluor 488 and 594 antibodies (1:400, goat, Molecular Probes).
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