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92 protocols using ly294002

1

Directed Differentiation of hPSCs to PS Subtypes

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Anterior, posterior and late PS cells, respectively, were derived from hPSC by adapting previously published protocols19 (link). In brief, hPSC were dissociated to single cells before being plated at 25,000 cm−2 in Essential 8TM medium (E8; Thermo Fisher Scientific) containing 10 µM Y27632 onto glass coverslips that were thinly coated with 1% GeltrexTM solution. On day 1, the medium was replenished with fresh E8. On day 2, the medium was replaced with anterior PS, posterior PS, and late PS differentiation medium, respectively, with the following composition: (1) anterior PS differentiation medium: Essential 6TM medium (E6; Thermo Fisher Scientific) supplemented with 20 ng ml−1 FGF2 (Peprotech), 10 µM LY294002 (Tocris), 25 ng ml−1 BMP4 (R&D Systems), and 50 ng ml−1 Activin A (R&D Systems); (2) posterior PS differentiation medium: E6 supplemented with 20 ng ml−1 FGF2, 10 µM LY294002, and 50 ng ml−1 BMP4; (3) late PS differentiation medium: E6 supplemented with 20 ng ml−1 FGF2, and 8 µM CHIR99021 (Tocris). All differentiation protocols were carried out for 48 h before downstream analyses.
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2

Modulation of Zebrafish Development

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Ouabain (Sigma-Aldrich; St. Louis, MO) and hydroxyurea (Merck, Kenilworth, NJ) were dissolved in water, Wortmannin (Sigma-Aldrich), PIK90 (Merck), LY294002 (TocrisBioscience, Bristol, UK), Rapamycin (Merck), AZD8055 (Santa Cruz Biotechnologies), and Withaferin A (TocrisBioscience) in DMSO, and solutions were further diluted in E3 embryo medium to concentrations of 3mM (Ouabain), 50mM (hydroxyurea), 1 µM (Wortmannin), 5 µM (PIK90), 25 µM (LY294002), 1.1 µM (Rapamycin), 30 µM (AZD8055), and 30 µM (WithaferinA). Embryos were incubated in inhibitor solution starting from 34 hpf and scored at 54 hpf.
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3

Protein Expression and Localization

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Primary antibodies used in this study are listed the reagent table. Most of the primary antibodies were used for immunofluorescence at the dilution of 1:50 to 1:100 except VEcad (1:400) and α-Tub (1:500). For Western blotting, the primary antibody dilution was 1:500 for all, except Cx37 (1:250). For immunofluorescence, the species-specific secondary antibodies used in this study were conjugated with Alexa Fluor 405, 488, 546, 594, and 647 (1:500; Thermo Fisher Scientific) or with horseradish peroxidase-conjugated secondary antibodies (1:2,500/5,000; Cell Signaling Technologies) for Western blotting.
Cells were treated with DAPT (5 μM for 12 h, Cat#D5942; Sigma-Aldrich), LY294002 (10 μM for 1 h, or 2.5 μM for 12 h; Cat# 1130; Tocris), U0126 (10 μM for 1 h, or 2.5 μM for 12 h; Cat# 9903; Cell Signaling Technology), MK8353 (2.5 μM for 12 h; Cat# SCH900353; SelleckChem), nocodazole (10 μM for 30 min; Cat#M1404; Sigma-Aldrich), and BAPTA-AM (10 μM for 2 h, Cat#A1076; Sigma-Aldrich).
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4

Endothelial Cell Culture and Signaling

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BD Matrigel™ Basement Membrane Matrix, culture dishes, and plates were obtained from Corning Inc. (Corning, NY, USA). Concanavalin A (Con A), sodium dodecyl sulphate (SDS), and bovine serum albumin (BSA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Endothelial Cell Medium (ECM) was obtained from ScienCell (Carlsbad, CA, USA). PD98059 and LY294002 were the products of Tocris Bioscience (Bristol, UK). The primary antibodies, such as rabbit anti-phospho-Akt (Ser473) (#4060S), rabbit anti-Akt (#9272S), rabbit anti-phospho-ERK1/2 (#4730S), rabbit anti-ERK1/2 (#4695S), rabbit anti-phospho-p38 (#4511S), rabbit anti-p38 (#8690S), mouse anti-p27 (#3686S), mouse anti-p21 (#2947S), rabbit anti-cyclin D1 (#55506S), and rabbit anti-cyclin E (#20808S) antibodies were from Cell Signalling Technology (Beverly, MA, USA). The polyvinylidene fluoride (PVDF) membranes were the products of Millipore (Billerica, MA, USA). EdU Apollo®488 In Vitro Imaging Kit was a product of RIBOBIO (Guangzhou, China).
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5

Antibody-Based Western Blot Analysis

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Anti-GAPDH antibody was purchased from Fitzgerald Antibodies (Acton, MA) and was used at a dilution of 1:1,000. Anti-phospho-Akt (Ser473), anti-Akt, and anti-phospho-eNOS (Ser1177) antibodies were purchased from Cell Signaling (Danvers, MA) and were all used at a dilution of 1:1,000. Anti-eNOS antibody (1:500 dilution), anti-mouse IgG (1:10,000 dilution), and anti-rabbit IgG (1:2,000 dilution) antibodies were purchased from Abcam (Cambridge, MA). MK2206 and GDC0068 were purchased from SelleckChem (Houston, TX). Gallein, LY294002, L-NAME, and ODQ were purchased from Tocris (Ellisville, MO). All other chemicals were purchased from Sigma (St. Louis, MO).
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6

Zebrafish Chemical Modulation of Tgfb1a

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For chemical treatments, 20 5-dpf zebrafish larvae fed with 10% cholesterol-infused diet were co-exposed with either 1 μM of JSI124, a Stat3 inhibitor (Tocris), or LY294002, a PI3K inhibitor (Tocris), for 7 days. For induction of tgfb1a expression from tgfb1a+ transgenic zebrafish, 1, 2 or 3 μM of mifeprisone (Sigma) were used to incubate 3-month-old fish for 6 weeks. For inhibition of Smad and Erk activity, 1 μM PD169316 (Sigma) or U0126 (Sigma) was added to tgfb1a+ zebrafish after 3 weeks of 3 μM mifepristone induction. All chemical dosages were selected based on the highest all-survival concentrations.
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7

Molecular Mechanisms Regulating Cell Signaling

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Dulbecco’s modified Eagles’ medium (DMEM), penicillin/streptomycin, trypsin/EDTA, fetal bovine serum (FBS), KGM-SFM medium, and phosphate-buffered saline (PBS) were from Gibco (Life Technologies, USA). Arecoline, melatonin and MTT were from Sigma (Sigma-Aldrich Chemical Company, St. Louis, MO, USA). ELISA kits for MMP-9 were from PeproTech (PeproTech, Inc., Rocky Hill, NJ, USA). Catalase, SB431542, 5Z-7-Oxozeaenol, PD153035, AG490, U0126, LY294002, and aspirin were purchased from Tocris. Phospho-TAK1 (p-TAK1) antibody was from Abcam (ab79583). Antibodies for TGF-β1, and GAPDH were from Santa Cruz. P-Smad2 antibody was from Cell Signaling Technology. PBL extract and ANE were prepared as before [8 (link), 12 (link), 13 (link), 21 (link)]. HC was synthesized as previously [22 (link)].
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8

Pharmacological Modulation of CD73

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Reagents were purchased and used as follows: GSK269962A (1 μM; Axon Medchem) in dimethyl sulfoxide (DMSO; #1167, Axon) was used as a ROCKi. LY-294002 (10 μM; #1130, Tocris Bioscience) in DMSO was used as a PI3K inhibitor. Adenosine (5 μM; A4036, Sigma-Aldrich) in DMSO, APCP (10 to 100 μM; M3763, Sigma-Aldrich), and anti-CD73 antibody (clone 2C5, Medimmune/Astra-Zeneca) were used. Time of treatment and drug concentration were specified in each experiment.
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9

Chondrogenesis Modulation via Signaling Inhibitors

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MSCs and ACs were cultured as 3D pellets (5 × 105 cells/pellet) in chondrogenic medium consisting of high-glucose DMEM, 0.1 µM dexamethasone, 0.17 mM ascorbic acid-2 phosphate, 4 mM sodium pyruvate, 0.35 mM proline, 5 µg/mL transferrin, 5 ng/mL selenous acid, 1.25 mg/mL bovine serum albumin (all from Sigma-Aldrich, St. Louis, MO, USA), 1% penicillin/streptomycin, 1% ITS+ premix (Corning Life Sciences, New York City, NY, USA) or similar amounts of insulin (Lantus, Sanofi-Aventis, Frankfurt, Germany), and 10 ng/mL recombinant human TGFβ1 (Biomol, Hamburg, Germany) for up to 6 weeks with medium changes three times a week.
For the indicated time points during MSC chondrogenesis, the chondrogenic medium was supplemented with the BMP inhibitor LDN-212854 (LDN-21; 500 nM in DMSO solvent, day 0–42; Sigma-Aldrich, St. Louis, MO, USA), the WNT-inhibitor IWP-2 (2 μM in DMSO solvent, day 14–42), or LY294002 (LY; 0.25 µM–25 µM in DMSO, day 21–42; both from Tocris Bioscience, Bristol, United Kingdom). When appropriate, the controls were treated with DMSO. Where indicated, TGFβ1 was withdrawn from day 21 onward. For the Western blot detection of phosphorylated AKT, pellets were harvested at the designated days 48 h after the last medium exchange.
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10

Tamoxifen Signaling Pathway Analysis

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Tamoxifen was purchased from Nacalai Tesque (Tokyo, Japan). Caffeine, caffeic acid, chlorogenic acid, pyrocatechol, and trigonelline were purchased from Sigma-Aldrich (St. Louis, MO). LY294002 and U0126 were purchased from Tocris Bioscience (Bristol, UK). Anti-ERα, anti-phospho-MEK1/2 (S217/221), anti-MEK1/2, anti-phospho-ERK1/2 (T202/Y204), anti-ERK1/2, anti-phospho-Akt (S473), anti-Akt, and anti-cleaved caspase-3 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-p53, anti-cyclin D1, and anti-β-actin antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Peroxidase-conjugated rabbit anti-mouse, goat anti-rabbit, and swine anti-goat secondary antibodies were from Dako (Glostrup, Denmark).
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