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125 protocols using transwell cell culture insert

1

Cell Viability and Migration Assays

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Cell viability and migration assays were performed as described earlier.19 Briefly, A549 cells were cultured in 60mm culture plates. After 12 hours of transfection with siRNA, cells were trypsinized, counted and 2000 cells were reseeded per well in 96-well plates in complete media. 12 hours post-reseeding in complete media, cells were serum starved for 3 hours followed by stimulation with EGF and were cultured in media containing 2% FBS. Cell viability was analyzed for four successive days using AlamarBlue™ (#DAL1100, Thermo Fisher Scientific, Waltham, MA, USA). At the same time following transfection, 5000 cells were seeded in Transwell™ cell culture inserts (#CLS3464, Corning Inc., Corning, NY, USA) in triplicate for each condition as described previously.19 Briefly, cells were allowed to grow on Transwell™ cell culture insert in serum free media, serum free media supplemented with EGF (50ng/ml) and serum free media supplemented with both EGF and Erlotinib (1μM). After 24hrs, membranes were washed once with PBS, fixed with ethanol, stained with Giemsa stain (#R03055, Sigma-Aldrich, St. Louis, MO, USA) and cells were counted on microscope.
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2

Dermal Equivalent Development Protocol

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Development of dermal equivalents was performed as described earlier [8 (link)]. The hydrated collagen (4 mg/mL) was isolated from rat-tail tendons. Obtainment of rat-tail tendons occurred as described before, including the ethics statement [28 (link)]. Below a 1 mL cell-free collagen mixture with on top a 3 mL fibroblasts containing mixture (1.2–1.5 x 105 fibroblasts in each dermal equivalent) were produced onto filter inserts (Corning Transwell cell culture inserts, membrane diameter 24 mm, pore size 3 μm; Corning Life Sciences, The Netherlands) and allowed to polymerize at 37°C. After polymerization, the dermal equivalents were cultured as described elsewhere [8 (link), 29 (link)] with fresh supplementation of 45 μM vitamin C (Sigma).
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3

Full-Thickness Skin Model Development

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Full thickness models (FTMs) were generated in two steps and cultured on inert membranes using a transwell system (Corning Transwell cell culture inserts, membrane diameter 24 mm, pore size 3 μm; Corning Life Sciences, The Netherlands) as described before9 (link),42 (link). In the first step, the dermal equivalents were generated using primary fibroblasts (1.2–1.5 × 105) in passage number 2–5, hydrated rat-tail tendon collagen (4 mg/mL), 1 M NaOH, Hank’s Balanced Salt Solution, and 5% fetal bovine serum (FBS; GE Healthcare, Chicago, IL, USA). After polymerization at 37 °C, the dermal equivalents were cultured 7 days as described elsewhere9 (link),42 (link). In the second step, the epidermal equivalents were generated by seeding primary keratinocytes (2.5 × 105/model) in passage number 1 directly onto each dermal equivalent as reported before9 (link),57 (link). The FTMs were kept submerged for total of four days. Hereafter, the FTMs were lifted to the air-liquid interface and cultured for 14–15 days under normoxia (20%) in the Memmert INC153med CO2 incubator (Memmert, Schwabach, Germany) or under hypoxia (3%) in the Heracell™ 240 CO2 incubator (ThermoFisher, Waltham, MA, USA). FTM batches were generated with 5 different primary cell donors.
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4

Cultivation of Full-Thickness Skin Models

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FTMs were produced using a transwell system on filter inserts (Corning Transwell cell culture inserts, membrane diameter 24 mm, pore size 3 μm; Corning Life Sciences, The Netherlands). To form the 3D dermal equivalent, a suspension of rat tail tendon collagen (4 mg/ml) was mixed with Hank's Balanced Salt Solution, 0.1% acetic acid, pH corrected to neutral with NaOH, and enriched with 10% foetal bovine serum. With this suspension, a 1‐ml cell free bottom layer and a 3‐ml fibroblast containing top layer (1.2 × 105 cells/dermal equivalent) were formed. After 1 week, primary keratinocytes (2.5 × 105/model) in their first passage were seeded onto each dermal equivalent and cultured as described extensively before (Thakoersing et al., 2011). Reduction in temperature occurred at once on Day 4 after air exposure using the Memmert INC153med CO2 incubator (Memmert, Schwabach, Germany). At least three biological replicates of FTMs were generated and were harvested 7, 14, 21, and 28 days after air exposure.
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5

Chemotaxis Assay for CLL Cells

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Chemotaxis assays across polycarbonate transwell inserts were performed as previously described32 (link). Briefly, 10 million cells were incubated in RPMI medium (containing 10% autologous plasma) in the absence or presence of 1 μM IPI-145 for 1 hr and transferred into the top chambers of Transwell® cell culture inserts (Costar®) with a diameter of 6.5 mm and a pore size of 5 μm. Filters were placed onto wells containing medium (control) or medium with 200 ng/mL CXCL12 (SDF-1α) (R&D Systems), and CLL cells were allowed to migrate for 3 hrs at 37°C. Migrated cells in the lower chamber were collected and counted on a FACSCalibur for 20 seconds at 60 μL/min in duplicates.
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6

Boyden Chamber Assay for Cell Migration

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Migration was analyzed by Boyden chamber assay using Transwell cell culture inserts (8.0 μm pore size; Costar, Cambridge, MA). Adjusted viable cell concentration was counted with trypan blue exclusion. Mouse embryonic fibroblasts were plated (5 × 105 cells/ml in serum-free DMEM) in the upper chamber. The lower chamber containing various growth factors indicated in the figure legend. After 5 h, the cells remaining on the upper surface of the membrane were wiped off, and cells migrating to the lower surface in triplicate wells were visualized with Diff-Quick stain (Sysmex, Japan) and counted in each of four randomly chosen light microscopic fields at × 20 objective.
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7

Transendothelial Electrical Resistance Measurement

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TEER was measured by impedance spectroscopy using the cellZscope (NanoAnalytics, Münster, Germany). A total of 100 000 HUVEC cells were seeded on Corning Costar Transwell cell culture inserts (5 µm pore size, Costar #3421) and grown for 2 days. For measurements, the basal electrode was overlaid by 500 µL equilibrated medium. After inserting filters, 275 µL of medium were added to the apical surface and the apical electrode was placed into the apical liquid. The measurements were performed immediately after positioning of apical electrodes. The software package provided with the instrument (NanoAnalytics, Münster, Germany) was used for data acquisition and analysis.
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8

Transwell Co-culture Assay for PCs

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Transwell cell-culture inserts (Catalogue: 3450, pore size: 0.4 μm; Corning Costar Corp., NY, USA) were placed in RPMI-1640 medium with 10% FBS and 1% antibiotics in the upper and lower compartments. The heights of the medium in the upper and lower compartments were maintained at similar levels, so the bulk flow was not due to a hydrostatic pressure gradient. PCs were resuspended at 5 ×104/well in the lower chamber (a 6-well plate), which contained 40 mM HG medium; the upper chambers containing the HG medium were seeded with 5 × 104/mL control PTECs or PTECs transfected with Lenti-virus (Lenti-Bim-shRNA) as described in the “Bim Lentiviral vector construction” section below. There was communication between different cells in the system through a Polyester (PET) membrane for 24 h, 48 h, and 72 h. As controls, PCs were also cultured in 6-well plates under normal glucose (NG) and HG medium without inserts.
The experimental groups included: monoculture of PCs in NG and HG, coculture of PCs with control PTECs in HG, coculture of PCs with PTECs transfected with Lenti-Bim-shRNA (PTEC-Bim-shRNA) in HG, and coculture of PCs with PTECs transfected with negative control virus (PTEC-Bim-shNC) in HG. All co-cultures were set up in triplicate.
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9

Co-culture Podocytes and B-cells

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Transwell cell culture inserts (well size: 0.4 μm; Corning Costar) were placed in RPMI 1640 medium with both upper and lower chambers containing 10% inactivated FBS and 1% double antibodies. In vitro expanded B-cells cultured for 12 days were resuspended at a density of 5×105/well in the lower chamber (6-well plate), which contained both 10 μg/mL of LPS and 50 ng/mL of IL-4. Mouse podocytes (MPC-5) (C2046; WHELAB BIOSCIENCE LIMITED, Shanghai, China) were transferred from 33°C to 37°C for 3 days and resuspended at a density of 5×105/well in the upper chamber, and cells were grown adnexally to 60%–70% at 48 h. Cytokines and metabolites produced by B-cells in the lower chamber were delivered through a polyester membrane. The control group was MPC-5 cultured in normal RPMI 1640 medium (without insert) placed in 6-well plates. The experimental group consisted of co-cultured MPC-5 and rat B-cells from the normal group, rat B-cells from the MN group, rat B-cells from the canagliflozin group, or rat B-cells from the losartan group, respectively.
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10

Podocyte Migration Assay Protocol

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Transwell cell culture inserts (pore size 8 μm; Corning Co-Star Corp., Cambridge, MA, USA) were placed in RPMI 1640 medium supplemented with 15% foetal bovine serum in the lower compartment. Podocytes with different pretreatments were harvested with trypsin and resuspended in serum-free medium. The upper chambers were seeded with 1 × 105 cells/ml, which were allowed to attach at 37°C for 12 h. Non-migratory cells were then removed from the upper surface of the chambers, and migrated cells on the lower membrane surface were fixed with 4% paraformaldehyde and stained with haematoxylin. The number of migrated cells was counted in 3 separate fields per membrane at 200× using phase-contrast microscopy (Leica Microsystems, GmbH). The data are presented as the mean ± S.D.
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