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61 protocols using ds 5mc

1

Anther Development Analysis in Oryza sativa

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Mature stage plants and flowers at anthesis were photographed with an Olympus C-770 digital camera (Tokyo, Japan). Mature anthers were examined using a Nikon SMZ1500 stereoscope and photographed with a Nikon DS-5Mc digital camera (Tokyo, Japan). The wild-type and osabcg15 mutant anthers were separately crushed and stained in 1 % I2–KI solution for 3–5 s to dye starch then photographed with a Nikon E600 microscope. Observation of anther development by semi-thin sections and transmission electron microscopy (TEM) was performed as described by Li et al. (2006 (link)) using an Hitachi H-7500 transmission electron microscope (Tokyo, Japan). Bright-field photographs of anther cross-sections were taken under a Nikon E600 microscope using a Nikon DS-5Mc digital camera, and the TEM results were photographed using a Gatan 832 CCD camera (Pleasanton, CA, USA). For scanning electron microscopy (SEM) observations, anthers were collected and processed essentially as described by Keijzer et al. (1996 (link)) and observed with a Quanta 200 scanning electron microscope (FEI, Hillsboro, OR, USA) under a strong vacuum. Anthers from different developmental stages, as defined by Zhang et al. (2011 (link)), were collected based on spikelet length and lemma/palea morphology.
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2

EGFP Expression in Implantation Embryos

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EGFP expression was observed under an epifluorescence inverted microscope (NikonT300, Japan) on D7. Briefly, different stages of implantation embryos were exposed to blue light (excitation wavelength 488 nm, emission wavelength 530 nm), the EGFP expression signal was observed and fluorescent photos acquired with a CCD camera (DS-5Mc, Nikon, Japan).
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3

Histochemical Analysis of Plant Tissues

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For light microscopy observations, flowers were fixed for 4 h at room temperature in a mixture of 2.5% (v/v) glutaraldehyde and 2.5% (v/v) formaldehyde (obtained from paraformaldehyde) in 0.05 M cacodylate buffer pH 7.0. After fixation, the plant material was rinsed with cacodylate buffer, then dehydrated in a graded acetone series, and finally embedded in Spurr’s resin. Semi-thin (0.5–1.5 μm) transverse sections were prepared using a Sorvall MT 2B ultramicrotome and glass knives, and mounted on glass microscope slides.
For histochemical analyses, semi-thin control sections for light microscopy were stained with 0.05% (w/v) alcoholic Toluidine Blue O (TBO). Detection of protein and water-insoluble polysaccharides was undertaken using Aniline Blue Black (ABB) and the periodic acid-Schiff reaction (PAS), respectively [25 ]. Moreover, sections of plant material prepared for TEM were treated with Sudan Black B (SBB) to detect the presence of lipids [26 (link)].
Observations and photographic documentation were undertaken using a Nikon Eclipse E 800 light microscope equipped with a Nikon DS-5Mc camera with Lucia Image software (University of Gdańsk, Gdańsk, Poland).
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4

Endothelial Cell Network Formation on Matrigel

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Endothelial
cells were plated
on solidified Matrigel (1.5 × 105 cells in a 12-well
Multiwell plate). After 18 h of incubation with NPs with and without
Sorafenib (5 μM) in medium with 5% FBS, endothelial cells were
photographed and network formation on Matrigel was measured by means
of the number of circles (Nikon Eclipse E400 and Nikon DS-5MC camera).45 (link)
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5

Fluorescent Image Acquisition and Processing

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Figures were prepared digitally using commercially available graphics software (Photoshop CS6, Adobe Inc.). Fluorescent images were acquired using a digital camera (DS-5Mc, Nikon, Germany) or confocal laser scanning microscopy (Eclipse C1 Plus, Nikon). Single fluorescent images of the same section were digitally superimposed. The contrast, brightness and sharpness of images were adjusted as needed for each section. No additional image alteration was performed.
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6

Imaging and Visualization of Plant-Pathogen Interactions

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Host penetration and infection by P. infestans was assessed by imaging leaf disks (diameter 10 mm) punched out from spot-inoculated leaf areas. Bright-field images were taken with a Zeiss Stemi 508 stereomicroscope equipped with a digital camera. Accumulation of H2O2 and O2 was visualized by DAB and NBT staining, respectively [55 (link)]. To optimize staining, leaf disks were kept overnight in staining solutions. Tissue clearing was performed by boiling the leaf disks in 96% ethanol. The leaf disks were subsequently kept in 70% ethanol until examination. Histochemical GUS staining was performed as described by Sun et al. [29 (link)]. Fluorescence microscopy was performed with a Nikon 90i epifluorescence microscope equipped with a GFP-LP filter and a digital Nikon DS-5MC camera. For each time point, at least eight leaf disks per potato genotype were observed. Each bioassay was performed at least twice, with the exception of the histochemical GUS assay. Pictures show single infection sites.
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7

TUNEL Assay for Cell Death Detection

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TUNEL assay was performed using the in situ Cell Death Detection Kit Fluorescein from Roche, according to the manufacturer's instructions. Briefly, after deparaffination and rehydration, tissues sections were treated for 20 min in 10 mM citrate buffer (pH 6.0) and incubated with TUNEL Reaction Mixture for 60 min at 37°C in the dark. Tissues were counterstained with DAPI (0.1 μg/mL). Images were obtained using an Eclipse E400 fluorescence microscope (Nikon), 400 × magnification, with a Digital Sight camera system (Nikon DS-5Mc), carrying built-in software for image acquisition (Nikon ACT-2U).
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8

Microscopic Examination of Skeletal Fragments

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Images were obtained from transverse and longitudinal thin sections of specimens or partly broken specimens observed under a conventional transmitted light microscope (TLM) and scanning electron microscope (SEM), respectively. Thin (ca. 30-μm thick) sections of specimens were observed in transmitted and polarized light and photographed with a Nikon Eclipse 80i transmitted light microscope fitted with a DS-5Mc cooled camera head. For SEM, skeletal fragments were placed on stubs with double-sided electrically conductive tape and sputter-coated with conductive platinum or carbon film. The selected fragments of thin sections and fractured specimens were slightly etched with formic acid (1%, 15 s) before observation with SEM. Analyses were performed using a Phillips XL20 scanning electron microscope at the Institute of Paleobiology, Polish Academy of Sciences and a Zeiss Merlin field emission scanning electron microscope at the Faculty of Chemistry, University of Warsaw, Poland.
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9

Mechanically Stimulated Zebrafish Larvae

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AB and snap29K164* mutant 6 dpf larvae were mechanically stimulated with a plastic tip and recorded for 1 minute with a NIKON DS-5MC digital camera, mounted on a NIKON SMZ-1500 stereomicroscope. 6 larvae for each condition were used and only the first 5 stimuli were considered for quantification. Statistical analysis was performed with Prism Software.
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10

Acridine Orange Fluorescence Microscopy

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Cells were treated with cyclophosphamide (5 mM), MLN8237 (100 nM), or in combination for 48 hours, and acridine orange (Sigma) was added. Detection of fluorescence signal was performed with a fluorescence microscope (Nikon Eclipse 80i) equipped with a 450–490-nm band-pass blue excitation filter, a 515-nm long-pass barrier filter, and a digital camera (Nikon DS-5Mc, Tokyo, Japan).
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