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54 protocols using trypsin

1

In Vitro Expansion of Dermal Fibroblasts

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Adult NHDF were obtained from Coriell (Camden, NJ, USA). Dermal fibroblasts from patients with PXE were provided according to the authors’ description in [28 (link)], who also listed the clinical characteristics of the PXE patients. The study was approved by the Ethics Committee of the HDZ NRW, Department of Medicine, Ruhr University of Bochum (registry no. 32/2008, approval date is 3 November 2008). Primary cells were maintained under standardized conditions (37 °C, 5% CO2) as a monolayer culture in tissue culture dishes (100 × 20 mm, Greiner bio-one, Frickenhausen, Germany) with Dulbecco’s modified Eagle’s medium without phenol-red addition (DMEM; Thermo Fisher Scientific, Waltham, MA, USA). DMEM was supplemented with either 10% (v/v) fetal calf serum (FCS; Biowest, Nuaillé, France) or 10% (v/v) lipoprotein-deficient FCS (LPDS) and 4 mM L-glutamine (PAN Biotech, Aidenbach, Germany), 1% (v/v) Penicillin-Streptomycin-Amphotericin B solution (100×; PAN Biotech, Aidenbach, Germany), as described previously [34 (link)]. The LPDS was prepared according to our previous work [28 (link)]. Medium changes were performed twice a week. The subculturing of near confluent primary NHDF was performed with an expansion ratio of 1:3 utilizing 0.05% (v/v) trypsin (PAN Biotech, Aidenbach, Germany) in Dulbecco’s phosphate buffered saline (PBS, 1×; Thermo Fisher Scientific, Waltham, MA, USA).
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2

Culturing Human Colon Cell Lines

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Human colon carcinoma cell lines HCT116 (CCL-247TM), SW480 (CCL-228TM) and human colon epithelium cell line FHC (CRL-1831TM, used as control) were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). All the cell lines were maintained according to the distributor’s instructions, at 37 °C in humified atmosphere with 5% CO2. Briefly, HCT116 cells were cultured in McCoy’s 5A (Gibco, Paisley, UK) supplemented with 10% fetal bovine serum (FBS; Gibco) and gentamicin (50 µg/mL; Gibco). SW480 cells were cultured in Dulbecco’s Modified Eagle’s (DMEM; Sigma Aldrich, Saint Louis, MI, USA), supplemented with 10% FBS and 50 µg/mL of gentamicin. FHC cells were grown in DMEM:F12 (Gibco) supplemented with 10% FBS, 10 mM HEPES (Sigma Aldrich), 10 ng/mL cholera toxin (Sigma Aldrich), 0.005 mg/mL insulin (Sigma Aldrich), 0.005 mg/mL transferrin (Sigma Aldrich), 100 ng/mL hydrocortisone (Sigma Aldrich, USA) and gentamicin (50 µg/mL; Gibco). All the cells were passaged twice a week with 0.05% trypsin (PAN-Biotech GmbH, Aidenbach, Germany) in EDTA (Eurx, Gdansk, Poland) and regularly tested for Mycoplasma sp. contamination by PCR-ELISA test (Roche, Mannheim, Germany), according to manufacturer’s instruction.
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3

Oxidative Stress Induction in Human Dermal Fibroblasts

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NHDF from a 57- and a 55-year-old man, as well as a 50-year-old woman, were purchased from Coriell (Camden, NY, USA). Cells were cultivated as a monolayer culture on hard plastic cell culture dishes with complete medium consisting of Dulbecco’s modified Eagle´s medium supplemented with 10% (v/v) fetal calf serum (Thermo Fisher Scientific, Waltham, MA, USA), 4 mM L-glutamine and 1% Penicillin-Streptomycin-Amphotericin B solution (100×; PAN Biotech, Aidenbach, Germany) under standardized conditions (37 °C, 5% CO2). Medium changes were performed twice a week and fibroblasts were subcultured with 0.05% trypsin (PAN Biotech, Aidenbach, Germany) in Dulbecco’s phosphate buffered saline (PBS; Thermo Fisher Scientific, Waltham, MA, USA) after reaching 90% confluence.
Cells were subcultured in an expansion ratio of 1:3 on 100 × 20 mm plastic cell culture dishes and subsequently seeded at passage 7 in a cell density of 50 cells/mm2. After 24 h, cells were incubated for 1 h with complete medium supplemented with 300 µM H2O2 (Carl Roth, Karlsruhe, Germany) or an appropriate volume of H2O (control). Thereafter, cells were washed with PBS and further cultured in complete medium for an experiment-dependent time. For investigations on enzyme activity or protein level, cells were reseeded at a cell density of 50 cells/mm2 and cultured for another 18 or 72 h in complete medium.
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4

Murine Mesenchymal Stromal Cell Culture

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Murine bone-marrow-derived mesenchymal stromal cell-line D1 (ATCC, CRL-12424TM) was cultured in expansion media composed of high-glucose Dulbecco-modified minimal essential medium (DMEM) (Life Technologies Limited Inc., Paisley, UK), 10% superior fetal bovine serum (FBS) (Sigma-Aldrich, St. Louis, MO, USA), 1% penicillin and 1% streptomycin (Pen-Strep) (Mediatech Inc., Manassas, VA, USA), 2 mM Glutamax (Life Technologies, Grand Island, NY, USA) in standard cultivation conditions (37 °C, 5% CO2, 95% humidity). On the day of producing the 3-D constructs, the cells were harvested at 70–80% confluency. For this purpose, PBS containing Pen-Strep and trypsin (both from PAN-Biotech GmbH, Aidenbach, Germany) were used to wash and detach the cells, respectively. Before the cells were encapsulated in fibrin gels, they were passed through a 40-µm cell strainer (Life Science Inc., Durham, NC, USA) and then counted to ensure no cell aggregation.
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5

Culturing Human and Murine Cell Lines

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Human embryonic kidney HEK293T cells and human fibrosarcoma HT1080 cells were cultured at 37 C and 5% CO 2 in DMEM (Gibco, Thermo Fisher Scientific, Langenselbold, Germany) supplemented with 10% heat-inactivated fetal bovine serum (h.i. FBS), 1 mM sodium pyruvate, and 100 U/mL penicillin, and 100 mg/mL streptomycin (all PAN Biotech, Aidenbach, Germany). Murine House Ear Institute-Organ of Corti 1 (HEI-OC1) cells were kindly provided by Dr. Federico Kalinec (UCLA Head and Neck Surgery, Los Angeles, CA) and cultured under permissive conditions at 33 C and 10% CO 2 in DMEM supplemented with 10% h.i. FBS, 1 mM sodium pyruvate, and 100 U/mL penicillin (Sigma-Aldrich Biochemie GmbH, Hamburg, Germany). All cell lines were passaged every 2-3 days using trypsin (PAN Biotech)-assisted detachment.
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6

Umbilical Cord MSC Culture and Characterization

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Human UC was obtained from full term deliveries (38–40 weeks) of healthy mothers after written informed consent, in accordance with the standards of the Hannover Medical School Ethics Committee and with the Helsinki Declaration of 1975, as revised in 1983. UC pieces (UCP) were prepared as previously described [19 (link)] and cultivated in MSC15 (MEM α, GlutaMAX™ Supplement, no nucleosides (Thermo Fisher Scientific, Waltham, MA, USA), 15% hAB-serum (C.C.Pro GmbH, Oberdorla, Germany), 1% penicillin/streptomycin (PAN-Biotech, Aidenach, Germany)) or human serum replaced by 5% platelet lysate (PL BioScience GmbH, Aachen, Germany). After approximately two weeks, the 12-wells (Sarstedt, Nuembrecht, Germany) contain around 0.5–1.2*105 adherent cells. To expand cells from 12 to 6-well plates (Sarstedt) for subsequent analysis, we removed the UCP and passaged the MSC culture with trypsin (PAN-Biotech). The MSC monolayer cultures were maintained in MSC10 (MEM α, GlutaMAX™ Supplement, no nucleosides (Thermo Fisher Scientific), 10% hAB-serum (C.C.Pro GmbH), 1% penicillin/streptomycin (PAN-Biotech)) or with 5% platelet lysate (PL BioScience GmbH). Mesenchymal origin was confirmed by antibody staining and was characterized as CD34- (Biolegend, San Diego, USA), CD45- (Miltenyi, Bergisch Gladbach, Germany), CD73 + (Biolegend), CD90 + (Biolegend) and CD105 + (Miltenyi).
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7

Retinal Microvascular Isolation via Trypsin Digestion

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We used modified retinal trypsin digestion protocol to isolate retinal microvessels from the surrounding tissue [25 ]. Retinas were separated in cold PBS, then immersed in 250 µL filtered ddH20, and, at room temperature, kept on a shaker until they disintegrated. Then kept in 0.3% trypsin (PAN Biotech 1:250) 0.1 M Tris buffer (pH 7.8) in the incubator adjusted to 37 °C. As the separation of microvessels were seen clearly, tissue was washed with dH2O, and the procedure was repeated until no debris remained. Isolated retinal microvessels were transferred to poly-l-lysine coated slides without disrupting their integrity, and air-dried. This method allowed isolation of the retinal vessels containing endothelial cells, basal lamina, pericytes, the attached perivascular astrocyte processes, without the presence of other cell types like photoreceptor cells.
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8

Isolation of Smooth Muscle Cells from Umbilical Veins

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Smooth muscle cells (SMCs) were isolated from human umbilical veins as previously described [61 (link)]. Briefly, the vein was washed with PBS and the endothelial cells were removed by adding 1 mg/mL collagenase (Sigma-Aldrich). The adventitia was removed, and the vein was cut into 1-mm rings and then bathed in Dulbecco’s modified Eagle’s medium (DMEM; Thermo Fisher Scientific) supplemented with 10% (v/v) fetal bovine serum (FBS; Thermo Fisher Scientific) and 1% (v/v) ABM antibiotics (PAN-Biotech, Aidenbach, Germany). To obtain a sufficient number of cells, cells were serially passaged with 0.05% trypsin/0.02% EDTA (PAN-Biotech) and cultured at 37 °C in a humidified environment (95%) with 5% CO2. The phenotype of the SMCs was verified by immunocytochemistry for the presence of α-smooth muscle actin (α-smA) and the absence of von Willebrand factor.
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9

Culturing Cell Lines 1059 and 1090

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Cells were cultured in EMEM supplemented with 10% (v/v) fetal bovine serum and 1% (v/v) antibiotic solution (10,000 U/mL penicillin, 10 mg/mL streptomycin), used as the complete culture medium. Cell lines 1059 and 1090 were cultured in a temperature-controlled humidified incubator with 5% CO2 at 37 °C. The cells were grown in 75 cm2 ventilated Falcon culture flasks (BD Biosciences, Franklin Lakes, NJ, USA) and subcultured by trypsinization (0.05% (w/v) trypsin, PAN Biotech, Aidenbach, Germany). The culture medium was changed every two or three days. Cells were used between the third and ninth passages for the experiments.
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10

Culturing HaCaT, HaSKpwC7, and Human Skin Fibroblasts

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HaCaT cells (Human adult low Calcium High Temperature) were cultured in DMEM (4.5 g/L Glucose, l-Glutamine, Sodium pyruvate, 3.7 g/L NaHCO3) (Pan Biotech) containing 10% FCS and 0.1% Pen/Strep (Pan Biotech). HaSKpwC7 cells (Human adult Skin Keratinocyte, p53 wild type) were cultured in FAD complete medium61 (50% DMEM Medium, 50% DMEM/F12 [(1 + 1) supplemented with 15 mM Hepes, L-glutamine) (Pan Biotech)], 0.1% Pen/Strep (Pan Biotech) and 5% FBS (Biochrom), 5 mg/L Insulin (Sigma Aldrich), 24 mg/L Adenine (Sigma Aldrich), 0.4 mg/L Hydrocortisone (Sigma Aldrich), 8.3 μg/L Cholera toxin (Sigma Aldrich) and 1 μg/L rhEGF (Thermo Scientific). For passaging, cells were detached by incubation in 0.05% EDTA/0.4% trypsin (37 °C, 5 min) (Pan Biotech) and re-plating at a density of 5,600 cells/cm2.
Normal Human skin fibroblasts were isolated from explant cultures of normal human skin samples and routinely cultured in DMEM based medium containing 10% FBS and 0.1% Pen/Strep39 (link). Passage 7–9 cells were used for generating the dermal equivalents. When used as feeder cells fibroblasts were γ-irradiated (60 Gy) and seeded at a density of 2,800 cells/cm2 in FAD complete media.
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