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Confocal software lcs version 2.61 build 1537

Manufactured by Leica
Sourced in Germany

Leica Confocal Software (LCS) version 2.61 Build 1537 is a software application designed to control and operate Leica confocal microscope systems. The software provides a user interface for image acquisition, processing, and analysis of data obtained from Leica confocal microscopes.

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3 protocols using confocal software lcs version 2.61 build 1537

1

Confocal Microscopy of Fluorescent Cells

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The cells were grown in the chamber slides. Confocal laser scanning microscopy was performed at the CNSI Advanced Light Microscopy/Spectroscopy Shared Resources Facilities at UCLA with technical assistance from Dr. Matthew Schibler. Briefly, images were captured using the Leica TCS-SP2-AOBS confocal microscope with x63 oil objective under different gain settings. The 488-line argon laser was used to capture GFP staining, and the diode 405 nm laser was used to capture DAPI nuclear stain. For mCherry staining, 594-line HeNe laser was used. Image acquisition was performed using Leica Confocal Software (LCS) version 2.61 Build 1537. Scans were performed with pinhole set at Airy unit 1.5. SmartGain were adjusted for each sample for optimal brightness. Fluorescent images of cells were taken as single channel images then converted to overlay images and all images were saved in TIFF format.
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2

Quantifying Cellular Lipid Content Using Confocal Microscopy

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Images were captured using the Leica TCS-SP2-AOBS confocal microscope with x63 oil objective, using identical magnification and gain settings, as previously described (8 (link), 29 ). The 488-line argon laser was used at 667 V to capture the BODIPY® FL C16 lipid stain; the diode 405 nm laser was used at 436 V to capture DAPI nuclear stain. Image acquisition was performed using Leica Confocal Software (LCS) version 2.61 Build 1537. Fluorescent images of cumulus cell lipid content were quantified by one of two observers using ImageJ (http://rsbweb.nig.gov/ij/) to determine mean fluorescence (fluorescence/unit area) of 20 cells per patient. The reproducibility of quantitative cellular lipid measurements made by the two different observers measuring the same lipid quantity was large (0.96 [95% CI 0.86–0.99]), indicating a very high degree of consistency between the two observers.
Images taken as single channel images were converted to overlay images and all images were saved in Tag Image File Format (TIFF). Single channel images of BODIPY® FL C16 and DAPI were used to create an overlay image, with single channel BODIPY® FL C16 used for lipid quantification in ImageJ. Background staining was accounted for by measuring five negatively stained regions per cell, which were subtracted from the total mean fluorescence.
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3

Fluorescent Biosensor Chimera Protein Analysis

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Images were collected with Leica TCS-SP2-AOBS and Leica TCS-SP8X confocal microscopies (Servicios Científico-Técnicos, Universidad de Oviedo) using a 63x/1.40 Oil objective. GFP was excited using a 488 nm argon/krypton ion laser and a white laser, and fluorescence emission was detected at 502–556 nm. Leica Confocal Software (LCS) version 2.61 Build 1537 and Leica Application Suite X (LASX) were used for data acquisition (Leica Microsystems Heidelberg GmbH (Germany)). S. albus transformation clones for pJFF1*-BS2-NP, pMAS40*-BS2-NP and pLMF*-BS2-NP plasmids were cultivated in R5A liquid medium, and these mycelia were analyzed by confocal microscopy in order to detect production of the corresponding fluorescent biosensor chimera protein. E. coli samples used for binding assays of each chimera fluorescent protein were analyzed under confocal microscope as well, following the same protocol that has been described in the “Detection assay” section.
Also, in order to determine if binding of the fluorescent biosensor chimera protein to E. coli cells surface was stable in each of the three cases, the recovered E. coli solution (after chimera binding) was filtered again before a second round of confocal microscopy studies.
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