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36 protocols using pd l1 pe

1

Measuring PD-L1 Expression on Naive CD4+ T Cells

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PBMCs were incubated at 150,000 cells/well in 96-well, round-bottom plates for 24 h at 37°C and 5% CO2 in the presence or absence of IL-27 (50 ng/ml; R&D Systems) or IFN-γ (100 ng/ml; R&D Systems). Cells were harvested and stained with Live/Dead Fixable Aqua viability dye (Thermo Fisher Scientific), CD3 AF700, CD4 PE-Cy7, CD27 PE-Cy5, CD45RO PE-Texas Red (BD Biosciences), and PD-L1 PE (BioLegend). Median fluorescence intensity of PD-L1 expression was assessed in the naive lymphocyte gate (CD3+CD4+CD27+CD45RO).
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2

Multiparametric Flow Cytometry Analysis

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Cells were washed in phosphate-buffered saline (PBS) and harvested with Accutase (EMD Millipore, #SCR005) for 10 min at room temperature. Dissociated cells were washed once in flow staining buffer (PBS + 1% FBS) and incubated with respective flow antibodies at 4 °c for 20 min in the dark. Flow cytometry was performed using the following antibodies: H2Kq/AF647 (Biolegend clone KH114, 1:200), PD-L1/PE (BioLegend Clone 10F.9G2, 1:100), H2Kb/AF488 (BioLegend Clone AF6-88.5, 1:400), H2Kb-SIINFEKL (BioLegend Clone 25-D1.16, 1:200), H2Kd/PE (BioLegend Clone SF1-1.1, 1:400). DAPI was used as a viability dye for dead cell exclusion. Samples were analyzed on an Attune NxT flow cytometer (Life Technologies).
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3

Flow Cytometric Analysis of PD-1 and PD-L1

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The frequencies of PD-1 and PD-L1 expressions were assessed using a Beckman Coulter flow cytometer (FC500; Beckman Coulter, Inc., Brea, CA, USA) in all studied individuals according to the stain-lyse and wash protocol as previously described by Moniuszko et al (19 (link)). Briefly, 50 µl EDTA-anti-coagulated whole blood was stained with 5 µl of the following mouse anti-human monoclonal antibodies, CD4 fluorescein isothiocyanate (FITC; cat no. 317408), CD8a-FITC (cat no. 301006), CD14-FITC (cat no. 325604), PD-1-phycoerythrin (PE; cat no. 329906) and PD-L1-PE (cat no. 329706) to identify PD-1+CD4+, PD-1+CD8+ T cells and CD14+PD-L1+ monocytes, respectively (all used as supplied and obtained from BioLegend, Inc., San Diego, CA, USA). All blood samples were incubated for 30 min at 4°C in the dark. Thereafter, the cells were lysed using Optilyse C Lysis Solution (Immotech SAS, Marseille, MC, France) and washed twice with cold PBS. A minimum of 100,000 events was acquired. FlowJo version 7.6.1 (Tree Star, Inc., Ashland, OR, USA) software was used for the analysis of flow cytometry data.
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4

Multiparametric Flow Cytometry Analysis

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Flow-cytometry antibodies included CD3e-PE, PD1-BV605, CD45-BV786 (BD-Biosciences), CD90.1-FITC, CD62L-PECy7, CD45.1-APC, CD45.1-PE (eBioscience), CD45.2-Alexa700, CD-8α-Percp-Cy5.5, CD4-FITC, CD103-APC, CD24-APCcy7 (Invitrogen), CD44-APCy7, CD4-BV421, F4/80-PercpCy5.5, CD39-PECy7, PDL1-PE, CD90.2-Alexa 700, MHCII-BV421, CD11b-BV650, Ly6C-BV711 (Biolegend), CD8α-PE-Texas-red (Life Technologies, Carlsbad, CA, USA). Blocking PD-1 antibody (clone RMP1-14, BioXCell, Branford, CT, USA) was administered systemically by intraperitoneal injections of 250 μg [41 (link)]. Blocking anti-CD40L (clone MR1, BioXCell) was administered systemically by intraperitoneal injections of 250 μg [19 (link)].
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5

Comprehensive Multiparameter Flow Cytometry

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Flow cytometry was performed with FACS Canto II (BD) with monoclonal antibodies CD4-V500 (RM4-5, BD Biosciences), CD25-PerCP-Cy5.5 (PC61.5, eBioscience/Thermofisher), Thy1.1-PerCP-Cy5.5 (HIS51, eBioscience/Thermofisher), FoxP3-eFluor450 (FJK-16s, eBioscience/Thermofisher), CD62L-PE (MEL-14, BD biosciences), NKp46-PE-Cy7 (29A1.4, eBioscience/Thermofisher) and CD3-APC (145-2C11, BD biosciences). Red blood cells were lysed with ACK (Ammonium-Chloride-Potassium) buffer. For BMDC phenotyping the following monoclonal antibodies were used: I-A/I-E Horizon450 (M5/114.15.2, eBioscience/Thermofisher), CD11c APC (N418, eBioscience/Thermofisher), CD86 FITC (GL1, BD biosciences), PD-L1 PE (10F.9G2, Biolegend), IL12p40/70 PE (C15.6, BD biosciences). To identify dead cells the Zombie NIR fixable viability kit (Biolegend) was used.
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6

Flow Cytometry Analysis of moDC Markers

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Treated or non-treated moDCs (5 × 104 cells/well) were incubated for 15 min at RT with specific mAbs (HLA-DR–FITC, PD-L1-PE, CD86-PerCP, CD80-PE-Cy7 and CD83-APC (Biolegend, San Diego, CA, USA) or with an isotype-matched control). The cells were acquired by flow cytometry and analyzed using FlowJo software, as previously described. The results were expressed as the fold change of the percentage of expression for each surface marker on the moDCs. The fold change was calculated for each marker (% marker expression on stimulated moDCs/% marker expression on unstimulated moDCs).
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7

Comprehensive Treg Phenotyping by Flow Cytometry

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Antibodies used for flow cytometry were as follows: CD4-Pacific Blue, CD25-PE, CD25-APC, CD127-FITC, Foxp3-PE, CD38-PE-Cy7, AnnexinV-PE, PD1-APC, CD8-FITC, CTLA4-PE-Cy7, CD44-FITC, CD62L-FITC, ICOS-FITC, GITR-PE, OX40-FITC, CD138-FITC, PD-L1-PE, and their isotype-matched mAbs (all from Biolegend). Intracellular staining of Foxp3, CTLA4, GITR, and OX40 were performed after fixation and permeabilization using cytofix/cytoperm kit (BD Biosciences), according to manufacturer’s protocol. Tregs were gated as CD4+CD25highFoxp3+ cells in CD4+ population and then sequential markers were assayed on Tregs, whereas CD4+CD25− cells were identified as Tcons. The remaining CD4+CD25low/intermediate subset was excluded in the current study because of their limited immunosuppressive activity compared with CD25high population (34 (link)). To avoid the effect of permeabilization when apoptosis assay was performed, CD4+CD25highCD127low/− cells were identified as Tregs (35 (link)). All flow cytometry was performed by BD FACS CantoII, and analyzed on FlowJo software version 10 (Treestar).
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8

Comprehensive Immune Cell Profiling

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The following anti-human mAbs were used for staining: HLA-DR-APC, CD11b-PErCP-Cy5.5, CD163-BV421, CD33-BV421, CD8-APC, PD-1-PE-Cy7, Tim-3-BV421, TIGIT-APC, CD27-Alexa Fluor 700, LAP-BV421, FoxP3-PerCP-Cy5.5 and PD-L1-PE purchased from Biolegend (San Diego, CA); CD11b-PE, CD1c-APC-Cy7, CD141-BV711, CD4-PerCP-Cy5.5, CD56-Alexa Fluor 700, CD3-Alexa Fluor 700, CD19-Alexa Fluor 700, CD16-PE-Cy7 , HLA-A2-APC-H7, CD73-PE, purchased from BD Biosciences (San Jose, CA); CD14-PE-TR purchased from Life Technologies (Carlsbad, CA); CD86-FITC purchased from R&D Systems (Minneapolis, MN); CTLA-4-FITC purchased from Ancell (Bayport, MN); and the PE-labeled HLA-A*0201-EGFR853-861 tetramer obtained from the Tetramer Facility of the National Institute of Allergy and Infectious Disease (Atlanta, GA).
Intracellular staining of FoxP3 was performed as follows: PBL or TIL were stained with surface marker antibodies, fixed with fixation/permeabilization buffer (eBioscience), washed, and stained for intracellular antigens in 1X permeabilization buffer. Cells were analyzed on an LSR Fortessa (BD) flow cytometer, and data analyzed using Flow Jo (Treestar, Ashland, OR). Dead cells were excluded based on viability dye staining (Zombie Aqua Fixable Viability Dye, Biolegend).
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9

Flow Cytometric Characterization of sEVs

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Purified sEVs were stained with PD-L1-PE (Biolegend) and CD54-FITC (Biolegend) for 1 h at 37 °C. The stained sEVs were then labeled with wheat germ agglutinin (WGA, Thermo Fisher Scientific) membrane dye for 15 min. Those sEV samples were measured by a micro plus flow cytometry (Apogee). The data was calculated by FlowJo X.0.7 software.
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10

Flow Cytometry Analysis of T-cell Responses

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For cell preparation, tumor tissues were dissociated by using according to the instructions, and CD8 T cells were purified by magnetic beads (Miltenyi, 130-045-201). For cultured cells, cells were harvested and adjusted to 1 × 105/100 μl, stained with antibodies (PD-L1-PE, BioLegend, 329705; B7-H3-PE, BioLegend, 331605; CD8-FITC, BioLegend, 344704; IFN-γ-APC, BioLegend, 502511; TNF-α-APC, BioLegend, 502913; IL-10-APC, BioLegend, 501409; IL-1β-APC, 17-7114-80, Thermo; Mouse IgG1-PE, BioLegend, 400112; Mouse IgG1-FITC, BioLegend, 400107; Mouse IgG1-APC, BioLegend, 400119) for 30 min, washed once, and centrifuged at 900 r/min. Finally, the supernatant was removed and resuspended in PBS for flow cytometry. The results of flow cytometry were analyzed using FlowJo software.
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