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20 protocols using acetonitrile

1

Metabolite Extraction and Analysis Protocol

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Methanol (MeOH), Methoxyamine hydrochloride (MeOX), N-Methyl-N-(trimethylsilyl) trifluoroacetamide (MSTFA), trimethylchlorosilane (TMCS), and pyridine anhydrous were purchased from Sigma-Aldrich (Merck, Darmstadt, Germany). Internal standards 4-phenylbutyric, myristic acid-d27, and injection standard N-pentadecane were also obtained from Sigma-Aldrich (Merck, Darmstadt, Germany). Acetonitrile, Methyl-tert-butyl-ester (MTBE), and ammonium formate were obtained from CHEM-LAB NV (Zedelgem, Belgium). Deionized water was obtained from a Milli-Q ultra-pure-grade water system (Millipore, Bedford, MA, USA). LC-MS grade Acetonitrile and water used in the RP-HRMS/MS analysis were purchased from Romil Ltd., Cambridge, UK. Metabolite standards and formic acid used in the RP-LC-HRMS/MS analysis were purchased from Sigma-Aldrich (Gillingham, UK). Antibiotics, including metronidazole, vancomycin, kanamycin, gentamycin, colistin, and clindamycin, were purchased from Sigma–Aldrich (St. Louis, MO, USA).
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2

Characterization of Carotenoid and Terpenoid Compounds

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Lycopene was purchased from TRC (Toronto Research Chemicals Inc., Toronto, ON, Canada) whereas β-carotene (99.7%) was from HPC Standards GmbH (Cunnersdorf, Germany). DL-Menthol (≥95%) and lauric acid (≥98%) were from Sigma-Aldrich (St. Louis, MO, USA). Capric acid (≥98%) was from TCI (Zwijndrecht, Belgium). Thymol (ca. 98%) was from Alfa Aesar (Kandel, Germany) and ammonia solution (25%, w/v) was from ChemLab (Zedelgem, Belgium). The solvents used were of the maximum required purity. Acetonitrile (>99.9%), acetone (>99.8%) and methanol (>99.8%) (Chem-Lab, Zedelgen, Belgium) used were HPLC grade. All other reagents used were of analytical grade.
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3

LC-MS Analysis of Fe(L^R)2(BF4)2

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LC–MS analysis of [Fe(LR)2](BF4)2 in methanol-d4 and acetonitrile-d3 was
performed with a Shimadzu LCMS-2020 high-performance liquid chromatograph
mass spectrometer with an electrospray ionization (ESI) and single
quadrupole detector (negative and positive ions) in the mass range
between 500 and 2000. The desolvation line/heat block temperature
was 250/400 °C. Nitrogen (99.5%) was used as a nebulizer and
drying gas, and acetonitrile (>99.9% HPLC gradient grade, Chem-Lab),
was used as the mobile phase with a flow rate 0.4 mL/min without any
preliminary treatment. Injection volume of the solution was 5 μL.
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4

Quantifying Neurotransmitters in Brain Tissue

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Brain tissue homogenates, including frontal cortex, dorsal and ventral hippocampus, were used to measure levels of glutamate (Glu), glutamine (GLN), and Gamma Aminobutyric Acid (GABA). A YL9112 Plus Isocratic HPLC Pump (YOUNG IN Chromass Inc., Korea) coupled with a DECADETM Elite Electrochemical Detector (Antec@Scientific, USA) was used. HypersilTM ODS C18, 250 mm × 10 mm × 5 μm column (Thermo Fisher ScientificTM, Massachusetts, USA) was used with pre-column derivatization, as previously described, with some minor modifications [19 (link)]. In brief, the voltage of the working electrode was set at +800 mV, and the mobile phase consisted of acetonitrile (Chem-Lab, Belgium): 100 mM monosodium-phosphate buffer pH 5.5, containing 0.5 mM Na2EDTA and 0.1 M Citric Acid 1-hydrate (PanReac AppliChem, Germany). Samples were initially diluted 1:5 with ddH2O, then further diluted with 0.1 M Borax buffer (Sigma-Aldrich, St. Louis, USA), including o-Phthalaldehyde (Sigma-Aldrich), pH 10.4. External standards were used each day to generate the calibration curve. Quantification of Glu, GLN, and GABA was performed by comparison of the area under the curve with that of reference external standards using Clarity Software (Data-Apex, Czech Republic), and cycling rates (GLN/Glu and GLN/GABA) were calculated.
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5

Quantitative Analysis of Bioactive Compounds

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Htyr (≥98%) was purchased from Extrasynthèse (Genay, France) and Tyr (≥98%) from Alfa Aesar GmdH & Co KG, (Karlsruhe, Germany), CA (98%) and DHPA (98%) were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany). Analytical-grade methanol, HPLC grade methanol, acetonitrile and water were obtained from ChemLab (Zeldegem, Belgium). Phosphoric acid (≥85%) and sulphuric acid (95–98%) were supplied by Sigma-Aldrich (Steinheim, Germany). Sodium carbonate anhydrous and Folin-Ciocalteu (F-C) reagent were obtained from ChemLab (Zeldegem, Belgium). Polyvinylidene fluoride (PVDF) membrane filters (0.22 µm) were from Schleicher & Schuell, (Dassel, Germany).
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6

Analytical Method for Cyanotoxin and Phycotoxin Determination

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Chromatographic quality organic solvents, namely acetonitrile and methanol were obtained from Chem-Lab (Zedelgem, Belgium). Chloroform, carbon tetrachloride, 1-undecanol and 1-octanol were purchased from Sigma Aldrich (St. Louis, MO, USA). The ILs 1-hexyl-3-methylimidazolium hexafluorophosphate (C10H19F6N2P) [HMIM][PF6], lithium-imide bis(trifluoromethylsulfonyl)imide (LiC₂F₆NO₄S₂) [LiTFSI] and 1-hexyl-3-methylimidazolium chloride (C10H19ClN2) [HMIM Cl], were supplied by IOLITEC (Heilbronn, Germany). Other reagents, including formic acid and sodium chloride, were acquired from Sigma. Anhydrous magnesium sulfate from Análisis Vínicos (Tomelloso, Spain), hydrochloric acid from Riedel-de-Häen (Wunstarfer, Germany) and phosphoric acid from Panreac Química S.A (Barcelona, Spain) were also used. Water was previously purified using a Milli-Q system (Millipore, Bedford, MA, USA).
The cyanotoxin and phycotoxin standards were obtained from Cifga S.A. (Lugo, Spain). The standard solutions of cyanotoxins—microcystine LR (MC-LR) and RR (MC-RR) and nodularin (NOD)—were supplied at 10 µg g−1, while okadaic acid (OA) was supplied at 16 µg g−1 and domoic acid (DA) at 40 µg g−1. All were stored in the dark at −20 °C, and standard working solutions were prepared daily diluting the toxins with ultrapure water.
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7

HPLC Analysis of Phenolic Compounds

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For HPLC analysis methanol (HPLC, 99.9%) and hexane (HPLC 95%) were purchased from Merck (Darmstadt, Germany). 2-Propanol (Chromasolv) was from Riedel de Haën (Seelze, Germany). Acetonitrile (HPLC, 99.9%), acetone (HPLC, 99.8%), and water (HPLC grade) were obtained from ChemLab (Zeldegem, Belgium). Phosphoric acid (≥85%) and sulphuric acid (95–98%) were supplied by Sigma-Aldrich (Steinheim, Germany). Sodium carbonate (anhydrous) and Folin-Ciocalteu (F-C) reagent were obtained from ChemLab. Other solvents and reagents were of the appropriate grade from various suppliers. Htyr (≥98%) was purchased from Extrasynthèse (Genay, France) and Tyr (≥98%) from AlfaAesar GmdH & Co KG, (Karlsruhe, Germany). Caffeic acid (CA) (98%) was from Sigma–Aldrich and α-Τ (>96%) were from Fluka Chemie GmbH (Buchs, Switzerland). Polyvinylidene fluoride (PVDF) membrane filters (0.22 µm) and cellulose acetate membrane filters (0.45 µm) were from Schleicher & Schuell, (Dassel, Germany).
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8

Quantitative Analysis of Bioactive Compounds

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Glucose, fructose, Folin-Ciocalteu phenol reagent, ABTS, 2, 2-diphenyl-1-picrylhydrazyl, gallic, hydroxybenzoic, chlorogenic, epicatechin, coumaric and caffeic acid were purchased from Sigma-Aldrich, Germany, all HPLC grade. Sulphuric acid (96%) and sodium carbonate from Fisher Scientific. Anthrone, methanol and phenol crystallized from PanReac AppliChem. Albumin from Merck. Bradford dye reagent from Alfa Aesar®. Acetonitrile and formic acid grade HPLC from Chem-Lab.
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9

Caffeic Acid Quantification and Stability

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Caffeic acid (3,4-Dihydroxycinnamic acid) was acquired from Sigma-Aldrich, St. Louis, MO, and used as received without further purification. The molecular structure of caffeic acid in non-hydrolyzed form is illustrated in Table 1. Iron (II) sulfate heptahydrate (FeSO4•7H2O) was acquired from Panreac, Barcelona, Spain, and hydrogen peroxide (H2O2 30% w/w) and titanium (IV) oxysulfate solution 1.9–2.1%, for determination of hydrogen peroxide, were acquired from Sigma-Aldrich, St. Louis, MO, USA. Sodium sulfite anhydrous (Na2SO3) was acquired from Merk, Darmstadt, Germany. Trifluoroacetic acid (HPLC grade, ≥99.0%) was acquired from Riedel-de Haën, Seelze, Germany, and acetonitrile (HPLC grade, ≥99.9%) was acquired from Chem-Lab, Zedelgem, Belgium. For pH adjustment, sodium hydroxide (NaOH) from Labkem, Barcelona, Spain, it was used, along with sulfuric acid (H2SO4, 95%) from Scharlau, Barcelona, Spain. Deionized water was used to prepare the respective solutions.
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10

Solvent Extraction of Lanthanides

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Tricaprylammonium chloride (Aliquat® 336, [A336][Cl], 88.2–90.6%), dicyclohexano-18-crown-6 (DCH18C6, ≥98%), LiCl (99%) and HNO3 (≥65%) were purchased from Sigma-Aldrich (Diegem, Belgium). SmCl3·6H2O (99.9%) and Eu(NO3)3·6H2O (99.9%) were purchased from Strem Chemicals, Inc. (Newburyport, USA). Sm(NO3)3·6H2O (99.9%) and LiNO3 (anhydrous, 99%) were purchased from Alfa Aesar (Karlsruhe, Germany). EuCl3·6H2O (99.9%), Sr(NO3)2 (99.9%) and granular zinc (30 mesh, ≥99.7%) were purchased from Acros Organics (Geel, Belgium). SrCl2·6H2O (≥99%), NH4Cl (≥99.8%), Na2SO4 (≥99%) and acetonitrile (≥99.5%) were purchased from Chem-Lab (Zedelgem, Belgium), as well as the Sm, Eu, Zn and Cu standard solutions (≥99.99%, 1000 μg mL−1, 2–5% HNO3, Plasma HIQU). NH4NO3 (≥99%) was purchased from Merck Millipore (Darmstadt, Germany). All products were used as received, without any further purification steps. Aqueous samples were prepared with Milli-Q water (18.2 MΩ cm at 25 °C).
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