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Trace ultra

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Trace Ultra is a high-performance gas chromatograph (GC) designed for precise and sensitive analysis of complex samples. It features advanced technologies that enable accurate identification and quantification of trace-level analytes. The Trace Ultra provides reliable and reproducible results, making it a suitable instrument for a wide range of applications in various industries.

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19 protocols using trace ultra

1

GC-MS Analysis of Chemical Compounds

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GC-MS analysis was accomplished based on the protocol of Yang et al. [11 (link)] with minor modifications. First, a GC system (Ultra TRACE Thermo Fisher Scientific, Waltham, MA, USA) coupled to a selective detector (ITQ1100) which was equipped with a capillary column (0.25 µm, 0.25 mm, 30 m length, TR-5MS, Thermo Fisher Scientific, MA, USA) was applied.
The carrier gas (helium, 1 mL/min) had a linear pressure (0.38 MPa). A 1-μL sample of aliquots was introduced into the GC apparatus at a split ratio of 1:20. In the analytical settings, the initial temperature was 100 °C (2 min), increased to 240 °C at 20 °C/min, and held constant at 240 °C for 20 min. The spectra were collected using an electron impact ion source (EI) between 25 and 550 Da.
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2

RNA Extraction and PCR Analysis of Key Genes

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A commercial RNA extraction kit (Tiangen Biotechnology Co. Ltd., Beijing, China) was used to extract total RNA from adenoma tissue, and a spectrophotometer (Thermo Scientific, Ultra Trace) was used to measure RNA concentration and purity. Primers for three genes, INSR (insulin receptor), KCNJ11 (potassium inwardly rectifying channel subfamily J member 11), and PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), were designed using the National Center for Biotechnology Information (NCBI) website (Table 1). The BioRad PCR machine was used for reverse transcription and PCR amplification in a single step.
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3

GC-FID Analysis of Essential Oils

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GC-FID analysis was performed using a Thermo Fisher Scientific Trace Ultra gas chromatograph (Thermo Fisher Scientific, Waltham, Massachusetts, USA) equipped with a DB-wax capillary column (30 m × 0.25 mm i.d., film thickness 0.25 μm, Agilent, Santa Clara, USA). The temperature of the injection was 220 °C. The injection volume was 1 μL (autosampler AI3000, Thermo Fisher Scientific) using a split ratio of 1:50 with a split flow of 75 mL min−1. Helium was used as carrier gas at a constant flow rate of 1.5 mL min−1. The oven temperature was kept at 65 °C for 10 min and then heated to 220 °C with 5 °C min−1 and kept constant at 220 °C for 9 min. The temperature of the detector was 250 °C. The chromatographic profile was analyzed using the relative percentages of the individual components based on the FID response (peak area). The data were acquired with Chrom Card Trace Focus GC (Thermo Fisher scientific, version 2.9). Interlaboratory comparison was carried out with Systema Natura GmbH (Flintbek, Germany) using the same GC-FID method for the analysis for the chromatographic profile of randomly selected EOs (n = 8).
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4

Extraction and Analysis of Fatty Acids

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Liver samples used for fatty acid analyses were kept frozen at −80°C and then lyophilized overnight. Total lipids were extracted from the powdered samples with the method of Bligh and Dyer (30 (link)) and evaporated to dryness under N2 flow. Separation of total lipid extracts into neutral and polar lipid fractions was performed by sequential elution with chloroform and methanol on silica gel cartridges (Bond- Elut, USA). Polar and neutral fractions were then transmethylated, and fatty acid methyl esters (FAMEs) were extracted as described in Nayak et al. (31 (link)). A GC analysis of FAMEs was carried out on a Trace Ultra gas chromatograph (Thermo Fisher Scientific, USA) equipped with a flame ionization detector, a programmable temperature vaporization injector and a capillary column (SupelcoWAX, Sigma-Aldrich, USA) as described in Nath et al. (14 (link)).
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5

Headspace GC-MS Analysis of Strawberry Flavor

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To identify major volatiles in the Strawberry Flavor Concentrate (Liquid Barn), headspace gas chromatography/mass spectrometry (GC/MS) analyses were conducted with a dynamic headspace analyzer (HT3 Automated Headspace Analyzer, Teledyne Tekmar) outfitted with a thermal desorption trap (Supelco Trap K Vocarb 3000 Thermal Desorption Trap, Sigma-Aldrich). The GC/MS (Trace Ultra, Thermo Fisher Scientific) was equipped with a single quadrupole mass spectrometer (Thermo Fisher Scientific) and a 30 m × 0.25 mm ID fused-silica capillary column (Stabiliwax-DA, Restek). The e-liquid additive solutions (0.1% in water) were subjected to dynamic headspace GC/MS analysis by placing 50 μl in a sealed 20 ml headspace vial. The vial was maintained at 30°C, swept with helium for 10 min (flow rate, 75 ml/min), and the volatiles were collected on the thermal desorption trap. Trap contents were desorbed at 260°C directly into the GC/MS using a split injection. The GC oven program had an initial temperature of 40°C (held for 3.0 min) followed by a ramp of 7.0°C/min to a final temperature of 230°C (held for 6.0 min). The MS was used in scan mode with a mass/charge ratio from 33 to 400 using a 3 min solvent delay. Mass spectral peak identifications were assigned based on the library search of the National Institute of Standards and Technology Standard Reference Database.
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6

Quantification of Urinary 3-PBA in ASD and Control Children

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Urine samples collected from ASD and CTR children were frozen and stored at −20 °C before the analysis.
Evaluation of urinary 3-PBA level requires hydrolysis to convert it into free 3-PBA that might be conjugated. Then the 3-PBA was extracted from the urine samples (1 mL) pre-treated with KOH by solid-phase extraction using Oasis Strata X C cartridge. Derivatization of 3-PBA and 2-PBA (the internal standard) was achieved by the addition of DIC and HFIP. In the final phase of the procedure, a liquid-liquid extraction (LLE) was made twice with 150 μL of n-hexane, followed by a vortex mixing during 10 min. Using a micropipette, 50 μL of supernatant were withdrawn (each time) and transferred in an “insert” placed in a vial.
A volume of 1 µL of upper layer was injected on a Thermo Trace-Ultra gas chromatograph coupled to an ion trap mass detector Thermo Polaris, operated in the electron impact ionization at 70 eV. The ion source temperature and the MS transfer temperature were at 250 °C. Operating in the splitless mode, the helium was used as carrier gas at a constant flow rate of 1.3 mL/min. The injector was maintained at 240 °C.
A program was developed in the SIM mode, based on the detection of selected ions for 3-PBA and 2-PBA (134, 140, 169, 195, 197, and 364).
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7

Pyrolysis-GC/MS Analysis of Organic Samples

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The sample was placed on a quartz wool inserted inside a 2 internal diameter (i.d.)X 40 mm quartz tube. The tube were placed in a CDS Pyroprobe 5150 pyrolyzer directly coupled to a Thermo Trace Ultra gas chromatograph (GC) and a quadrupolar DSQ II mass spectrometer (MS). The resistively heated coil of the apparatus heat the samples with a heating rate of 5 °C.ms−1 from room temperature to the selected temperature which was maintained 30 s. The pyrolysis products were sent directly to the GC/MS in a stream of helium. Direct coupling prevents the loss of volatile compounds or possible degradation of the pyrolysis products. The GC separations were conducted in a fused silica capillary column (BPX 5 (SGE), 5% Phenyl Polysilylphenyl-siloxane, 30 m length, 0.25 mm i.d., 0.25 µm film thickness) and helium 5.5 (Messer), 99.9995% purity as carrier gas. The injector was set to 250 °C with a split of 100/1. The column temperature was programmed from 60 to 300 °C at 5 °C.min−1 and held at 300 °C for 15 min. The ionization mode was electron impact (70 eV), the data were recorded in full scan mode, the source temperature was 220 °C and the transfer line was set to 280 °C. The pyrolysis or thermochemolysis products were identified on the basis of their GC retention times and by comparison of their mass spectra with analytical standards and library data (NIST).
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8

Analysis of P. heptaphyllum Essential Oil

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The analysis of the chemical constituents of the essential oil of the resin of P. heptaphyllum was performed using a gas chromatograph (Trace Ultra, Thermo Scientific®) coupled to a mass spectrometer (DSQII, Thermo Scientific®) as previously described.[21 ]
The identification of the substances contained in the oil and resin was performed by comparing the similarity of the obtained mass spectra obtained with those in the literature.[22 23 ] The relative percentages of these compounds were calculated from the mean areas of the chromatograms.
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9

Analytical Characterization of Steroid Conjugates

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The PBA and 5βCA intermediate methyl ester products were analyzed by GC-MS with a Thermo Scientific Trace Ultra gas chromatograph interfaced with a Thermo Scientific TSQ Quantum XLS (Thermo Scientific; Waltham, MA) using splitless injection. Separation was performed on a 10.4 m DB-1 WCOT column (Agilent Technologies Inc.; Santa Clara, CA). PBA and 5βCA were analyzed on a Waters Q-Tof API-US mass spectrometer with Advion TriVerso NanoMate (Advion Biosystems; Ithaca, NY) using positive ion electrospray. 5βCA-HLA, PBA-HLA, and ODA-HLA conjugates were analyzed on a Bruker Avance 600 MHz NMR spectrometer with TXI Cryoprobe at 25 °C, with 64 to 128 scans, 8192 to 16 384 data points, and 10–12 s relaxation delay. 5βCA-HLA and PBA-HLA were analyzed in 50/50 D2O/DMSO-D6 (D2O from Acros Organics “100.0%” D, Fisher Scientific, DMSO-D6 from Cambridge Isotope Laboratories, 99.9% D). Data was processed in Mnova NMR (Escondido, CA).
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10

GC-MS Analysis of Essential Oil Components

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The identification of the essential oil’s components was carried out by GC-MS analysis. Identification of the chemical constituents was done in a gas chromatograph (TraceUltra, Thermo Scientific, Waltham, MA) coupled with mass spectrometer (DSQII, Thermo Scientific, Waltham, MA), and in a gas chromatograph coupled with FID detector for quantification (Focus, Thermo Scientific, Waltham, MA). The compounds were separated in a DB-5 fused silica capillary column 30 m × 0.25 mm ×0.25 μm film thickness (J&W Scientific, Folsom, CA). Helium was the carrier gas used, at a flow rate of 1.0 mL/min. The analyses were performed using splitless injection at 220 °C. The oven temperature program used was 60–240 °C at 3 °C/min, and the final temperature was held for 7 min. The GC–MS interface and FID detector were maintained at 240 °C and 250 °C, respectively. The oil was dissolved in hexane (2 mg/mL) for the analyses. The MS data were obtained in the scan mode (35–400 m/z) and EI mode operating at 70 eV. Kovats retention indices (KI) were determined by injection of standard hydrocarbon solutions (C7–C30). The components were identified by comparison with data from the literature (Adams 1995 ) and with the profiles from the NIST mass spectral library (version 2.0, 2005), and by injection of pure compounds, when available.
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