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7 protocols using stop and glo reagent

1

Reconstitution and Characterization of Influenza Viral RdRp Complex

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The 293T cells were grown on 96-well plates. At 60–70% confluence, the cells were co-transfected with a mixture of the plasmids (50 ng per plasmid) pPB1, pPB2, pPA, pNP, pPolPR8MLuc and the respective PB1-F2 expressing plasmids (pPB1-F2 PR8/pPB1-F2 PR8 3KR/pPB1-F2 HK97/pPB1-F2 HK97 4KR/pPB1-F2 Stop3aa). Turbofect in vitro transfection reagent (Thermo Scientific) was according to the manufacturer’s instruction. At 48 hr p.t., the cells were gently washed with PBS and directly lysed in passive lysis buffer (Promega). Twenty microliters of the supernatant was transferred to an opaque, flat-bottom 96-well plate (Costar). A Synergy HT Multi-Mode Microplate Reader with automatic dispensers was used to add 50 μl LarII reagent (Promega). After a 2-second delay, the firefly luciferase luminescence in separate wells was measured. Subsequently, 50 μl of the Stop and Glo reagent (Promega) was added, and after a 2-second delay, the renilla luciferase luminescence in separate wells was measured. Three independent experiments were performed in triplicate for each sample. The luminescent signal for firefly luciferase was normalized to the renilla luciferase luminescent signal. The results were further normalized to the activity of vRdRp in the presence of the wt PB1-F2. The error bars indicate the SD for all independent measurements.
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2

Dual-Luciferase Reporter Assay Protocol

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Cells were transiently transfected with 2 μg of firefly/renilla luciferase reporter plasmid. Protein extracts were prepared using the Passive Lysis Buffer provided in the Dual-Luciferase Assay (Promega). Equal amounts of protein extracts were plated into a 96-well plate. Firefly luciferase activity was measured for 12 seconds using the LB 960 luminometer (Berthold Technologies, Thoiry, France). To assess the internal standard activity, Stop and Glo reagent was added (Promega), and the peak of the renilla luciferase activity was then measured. Normalized relative luciferase units (RLU) were then calculated as firefly luciferase units of protein extracts of treated or untreated cells divided by renilla luciferase units of protein extracts of untreated cells. Data represent the mean ± SEM of three independent experiments, each performed in duplicate.
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3

Dual-Luciferase Assay for circRBMS3 and miR-424

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The seeding of HEK293T cells took place into 96-well plates and underwent culture to 50–70% confluence prior to transfection. For circRBMS3 and miR-424, 600 ng plasmids of circRBMS3-wt and circRBMS3-mut, 20 nmol miR-424 and N.C. were transfected. Following incubation for 48 hours, the detection of firefly and Renilla luciferase activities was conducted by the Promega Dual-Luciferase system. For providing an internal reference, firefly luciferase activities were evaluated with a 100 ml Luciferase Assay Reagent II (LAR II) (Luciferase Assay Reagent, Promega), and then 20 ml lysis buffer, moreover 100 ml Stop and Glo® Reagent (Luciferase Assay Reagent, Promega) was utilized for evaluating Renilla luciferase activities. Calculation of the difference between a firefly and Renilla luciferase activities was to evaluate relative luciferase activity.
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4

Dual-Luciferase Assay Protocol for Promoter Activity

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Dual-luciferase assays were carried out as described with slight modifications (Hellens et al., 2005 (link)). Briefly, after 8 hours of induction, the transfected protoplast suspension was transferred to a 1.5 mL centrifugation tube and centrifuged at 100 g for 10 min. The supernatant was discarded and the pellets were re-suspended in 100 μL of 1X passive lysis buffer (PLB) provided in the Dual Luciferase Reporter Assay System kit (Promega). Protoplasts were disrupted by vortex for 10 s followed by centrifugation at 10,000 g for 2 min. A 5 μL of the supernatant sample was loaded into a well of a white flat bottom Costar 96 well plate (Corning). Dual-luciferase assays were performed in Synergy™ HTX Multi-Mode Microplate Reader (BioTek). A 40 μL luciferase assay reagent and a 40 μL Stop and Glo reagent (Promega) were injected per well. The ratio of LUC to REN was measured to represent the activity of the corresponding promoter when the effector plasmid DNA was co-transfected.
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5

Luciferase Assay of PTX3 Promoter Activity

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The luciferase reporter plasmid harboring the human PTX3 promoter was kindly provided by Dr. Andrea Doni [7 (link)]. Transfection was performed with ExGen 500 according to the manufacturer’s instructions (Fermentas Inc, Mississauga, ON). Luciferase activity was measured as we previously described [16 (link)]. Briefly, HASMC (3.5×104) were seeded into 24-well plates in complete media (DMEM/10% FBS). At 70% confluency, transfection was performed in triplicate using ExGen 500 according to the manufacturer’s instructions (Fermentas, Mississauga, ON). In each well, 0.8 μg of PTX3 promoter-luciferase DNA construct was added and Renilla luciferase reporter vector (pRL-TK 0.2 μg/sample) was co-transfected and incubated for 24 h. The media were then changed, and cells were stimulated with DEX (10−6 M) and/or TNF (10ng/ml) for 12h [16 (link)]. Luciferase activity was measured using the Dual-Luciferase Reporter Assay System (Promega) and a luminometer (LB9501, Berthold Lumat). Briefly, 20 μl of cell lysate was mixed with 100 μl of Luciferase Assay Reagent II, and firefly luciferase activity was recorded. One-hundred microliters of Stop and Glo Reagent (Promega) was then added, and Renilla luciferase activity was again measured. All values were normalized to the mock Renilla luciferase activity.
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6

Dual-Luciferase Assay for circRNA4557-miR-149-5p Interaction

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The targeting relationship between circRNA4557 and miR-149-5p was verified by the dual-luciferase reporter assay. Wild type (WT) and mutant vector (MUT) of circRNA4557 were cloned. These constructs were co-transfected into 293T cells with miR-149-5p mimetic or negative control. A lysis mixture (20 µl) was added to the sample, followed by 100 µl of luciferase assay reagent II (LARⅡ). The renilla luciferase activity acted as an internal control, and 100 µl of Stop and Glo reagent (Promega) was added to determine the luciferase activity of the sea pansy (Renilla reniformis) reporter gene.
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7

Dual Luciferase Assay of U937 Cells

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Thirty thousand GFP-positive DAPI-negative U937 cells were FACS-sorted into 0.5 ml of complete culture medium and recovered by centrifugation as described above. Media was removed by aspiration and the cell pellet was lysed with 50 µl of passive lysis buffer (Promega) for 20 min at room temperature with occasional vortexing. Ten microliters of each sample were then plated in triplicate per well of a 96-well plate and analyzed for Firefly luciferase activity using 50 µl of luciferase II substrate reagent (Promega). Luminescence in each well was measured in a Veritas microplate luminometer (Turner Biosystems) equipped with Glomax v1.9.3 software using an integration time of 5 s. Immediately after, 50 µl of Stop and Glo reagent (Promega) was added to each well and Renilla luciferase activity was measured as described above. Normalized light units (NLU) were obtained by dividing the Firefly luciferase relative light units (RLU) by the corresponding Renilla RLU of each well. The relative luciferase activity was then calculated by dividing the NLU of each sample by the average NLU of the control sample (+ΔHSUR2), set as 1.0.
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