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8 protocols using castanospermine

1

Evaluating Antimicrobial Activity of KTs

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Purified KTs (100 μg/ml) from both WaF17.12 and WaATCC 96603 were pre-incubated with 25 µM of castanospermine (Sigma-Aldrich), a β-glucanase inhibitor, for 1 h at 25 °C under static conditions [26 (link)] and, then, added to the P. berghei cultures, in triplicates. The inhibitory effect of the indolizine alkaloid on the antimicrobial activity of KTs was evaluated on P. berghei sporogonic stage cultures after 24 h incubation at 19 °C and it was indicated as the average of three replicates. Upon castanospermine treatment, the number of parasites was compared to controls.
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2

Inhibition of Cellular Processes

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MG-132 (ML4834) was purchased from the Peptide Institute (Japan). Chloroquine (C6628) and castanospermine (532673) were from Sigma-Aldrich® (Germany). Cyclohexinmide (EY2005) was purchased from the Amquar (USA).
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3

Quantifying Yeast α-Glucosidase Activity

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The α-glucosidase activity was measured as previously described [44 (link),48 (link)], using 4-methylumbelliferyl-α-D-glucopyranoside (Sigma-Aldrich) as substrate. Yeast-like cells were grown for 4 days at 37 °C in YPD broth, pH 7.4, pelleted by centrifuging, and disrupted with glass beads in an MSK cell homogenizer (Braun, Melsungen, Germany). Cell walls and debris were pelleted by centrifuging, and the supernatant was saved and kept at −20 °C until used. The enzyme reactions were prepared in a volume of 200 μL containing 200 μg protein, 40 μM 4-methylumbelliferyl-α-D-glucopyranoside, and 50 mM sodium phosphate buffer, pH 7.0, and were incubated at 37 °C for 60 min. Reactions were terminated by adding 3.3 mL of 50 mM glycine-NaOH buffer, pH 11.0, and the free 4-methylumbelliferone was measured in an LS-5B spectrofluorometer (Perkin-Elmer, Waltham, MA, USA), with excitation and emission wavelength set at 350 and 440 nm, respectively. Total activity was expressed as nanomoles of 4-methylumbelliferone released per min per total protein. To differentiate between α-glucosidase I and α-glucosidase II activities, the enzyme reactions were performed in presence of 10 μM castanospermine (Sigma-Aldrich) [32 (link),45 (link)].
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4

Fluorogenic Enzymatic Assays for α-Mannosidase and α-Glucosidase

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The α-mannosidase and α-glucosidase activities were measured using the fluorogenic substrates 4-methylumbellyferyl-α-D-mannopyranoside (Sigma) and 4-methylumbellyferyl-α-D-glucopyranoside (Sigma), respectively. Cells were harvested by centrifugation, broken with glass beads in a FastPrep machine (Thermo Scientific), and the homogenate centrifuged at 21,000 × g and 4°C for 10 min. The supernatant was saved and used to quantify enzyme activity as reported (Mora-Montes et al., 2004 (link); Robledo-Ortiz et al., 2012 (link)). Aliquots containing 100 μg protein were resuspended in 10 mM phosphate buffer, pH 7.0, in a total volume of 200 μL. Then, 40 μM of either 4-methylumbellyferyl-α-D-mannopyranoside or 4-methylumbellyferyl-α-D-glucopyranoside were added and the reaction incubated at 37°C for 30 min. The reaction was stopped by addition of 3.3 mL 50 mM glycine-NaOH, pH 11.0, and fluorescence of the released 4-methylumbellyferone (MU) was measured in a Perkin-Elmer LS-5B luminescence spectrofluorometer, with excitation and emission set at 350 nm and 440 nm, respectively. Total enzyme activity was expressed as nmoles of MU min-1 total protein-1. In assays to inhibit mannosyl-oligosaccharide glucosidase, 10 μM castanospermine (Sigma) was added prior the incubation step at 37°C (Lopes-Bezerra et al., 2015 (link)).
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5

Recombinant IgG1 Production in CHO Cells

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Ammonium chloride, castanospermine, cytidine (Cyt), 1‐deoxymannojirimycin hydrochloride (deoxymannojirimycin), deoxynojirimycin hydrochloride (deoxynojirimycin), dexamethasone, fetuin from fetal bovine serum, L‐fucose (Fuc), D‐(+)‐mannose (Man), monensin sodium salt (Monensin), mycophenolic acid (MPA), N‐acetyl‐d‐mannosamine (ManNAc), D‐(+)‐raffinose pentahydrate (Raffinose), reactive Red 120, sucrose, d‐tagatose, uridine were purchased from Sigma Aldrich (St. Louis, MO). 2‐Acetamido‐1,3,4,6‐tetra‐O‐acetyl‐2‐deoxy‐ß‐D‐mannopyranose (AC4ManNAc) and tetraacetylated N‐azidoacetylmannosamine (ManNaz) were purchased from Carbosynth (Compton, UK), mannostatin A HCl from Santa Cruz (Dallas, TX) and copper(II) chloride dihydrate (CuCl2), dimethyl sulfoxide (DMSO), 96% ethanol, D‐(+)‐galactose (Gal), glycerol, manganese(II) chloride (Mn), N‐acetyl‐2,3‐dehydro‐2‐deoxyneuraminic acid (DANA) and 2‐F‐peracetyl fucose (2F‐PerAcFuc) were purchased from Merck (Darmstadt, Germany).
CHO K1 and CHO DG44 cell lines producing two different recombinant IgG1 were used in this study.
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6

Analyzing Glycosylation of Recombinant Proteins

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For co-expression with different constructs, agrobacteria were mixed, infiltrated into leaves and harvested at the indicated time points. For the block of α-mannosidases, 50 μM kifunensine (Santa Cruz Biotechnology) was co-infiltrated with the agrobacteria suspension and for the block of α-glucosidases 200 μM castanospermine (Sigma-Aldrich) was co-infiltrated. Crude protein extracts or purified protein were subjected to SDS-PAGE under reducing or non-reducing (no reducing agent, no boiling of samples) conditions and after blotting the proteins were detected using anti-His (Thermo Fisher Scientific), anti-RBD (Sino Biological) anti-GFP-HRP (Miltenyi Biotec), anti-RFP (Chromotek) and anti-HA (Roche) antibodies. For deglycosylation, proteins were denatured and incubated with or without Endo H or PNGase F (both from NEB) according to the manufacturer’s instructions.
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7

Antibody and Reagent Procurement

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The antibodies used in the current study are listed in Table S5. TNFα and IFNγ were purchased from R&D Systems. EGF, cycloheximide, MG132, LiCl, tunicamycin, swainsonine, castanospermine, deoxymannojirimycin, PUGNAc, and Thiamet G were purchased from Sigma-Aldrich (St. Louis, MO, USA). SB2035580, PD89059, LY294002, U0126, and Bay 11-7082 were purchased from Cell Signaling Technology (Denvers, MA, USA).
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8

Lipid Biosynthesis Inhibitors Protocol

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HMG-CoA reductase inhibitors were a kind gift of Bayer Pharmaceuticals PLC and AstraZeneca PLC. Deoxymannojirimycin and tunicamycin were purchased from Calbiochem. Farnesyl pyrophosphate and castanospermine were purchased from Sigma.
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