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8 protocols using alexa fluor 488 conjugated goat anti mouse igg

1

Indirect Immunofluorescence Assay for Cellular Proteins

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Indirect immunofluorescence assays (IFAs) were performed as previously described [13 (link)]. Cell membranes were permeabilized by 0.2% TritonX-100 in phosphate buffered saline (PBS) for 5 min and blocked in 1% bovine serum albumin (BSA) for 30 min before incubation with primary and secondary antibodies. Primary antibodies against mucin 5B (MUC5B) (1:100 dilution; Abcam, Cambridge, UK) or the zona occludens-1 protein (ZO-1, 1:100 dilution; Abcam) in 1% BSA were incubated with cells overnight at 2–8 °C. Then, cells were washed and incubated for 1 h with Alexa Fluor 488-conjugated goat anti-mouse IgG (1:400, Beyotime Biotech, Nantong, China) or Alexa Fluor 555-conjugated goat anti-rabbit IgG (1:400, Beyotime Biotech). The cells were further stained with 2,4-diamidino-2-phenylindole (DAPI; Beyotime Biotech) for 5 min at room temperature and washed with PBS. Cells were then imaged using an LSM 710 laser scanning confocal microscope (Zeiss, Germany).
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2

PEDV-S Protein Immunofluorescence Assay

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The 293T cells were treated with mRNA-containing LNPs, washed three times with PBS, fixed for 20 min with 4% paraformaldehyde, and then permeabilized for 30 min with 0.1% Triton X-100. The fixed cells were incubated with an anti-PEDV-S monoclonal antibody for 2 h at 37°C. After three washes with PBS, the cells were incubated with an Alexa-Fluor-488-conjugated goat anti-mouse IgG (Beyotime) for 1 h at 37°C. The cell nuclei were stained with 0.01% 4′,6-diamidino-2-phenylindole (DAPI) for 10 min at room temperature. After washing again with PBS, fluorescence images were observed using a fluorescence microscope (Nikon, Japan).
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3

Microscopic Visualization of Nuclei

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10-d-old red light-grown seedlings were incubated in 50 μM MG132 for 12 h and exposed to 30 μmol m−2 s−1 blue light for indicated time before nuclear extraction. Nuclear extraction was performed as Yu described with some modifications51 (link), briefly, seedlings were collected and fixed in 4% formaldehyde for 20 min after blue light treatment, washed twice with PBS, chopped using a razor blade, and suspended in sorting buffer [100 mM Tris-HCl, pH 7.5, 50 mM KCl, 2 mM MgCl2, 0.05% Tween 20, and 5% sucrose], and resuspended with buffer 2[125 mM sucrose,10 mM Tris-HCl, pH 9.5, 10 mM KCl, 0.1%Triton-100], added onto buffer 3[850 mM sucrose,10 mM Tris-HCl, pH 9.5, 10 mM KCl, 0.1%Triton-100) and centrifuged by 15000 rpm at 4 °C for 30 min to precipitate the nuclei. Nuclei were incubated with anti-CRY2 antibody (1:100, prepared in our lab52 (link)) and anti-Myc (1:100, MBL, M192-3) overnight, washed with 0.2%PBST 3 times, incubated with CY3 conjugated goat anti-rabbit IgG (1:500, Beyotime, A0516) and Alexa Fluor 488 conjugated goat anti-mouse IgG (1:500, Beyotime, A0428). Images were captured at 63× oil magnification using a Leica confocal microscope (TCS SP8X, Leica). Immunoblots were used to quantify expression levels of CRY2 and Myc-TCP22. CRY2 and Myc-TCP22 were detected with anti-CRY2 and anti-Myc, respectively.
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4

Immunofluorescence Analysis of PDGFRα and Proliferation

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Tissue samples were embedded as frozen tissue blocks after dehydration in 20% sucrose, fixed with ice‐cold 4% paraformaldehyde for 6–8 h, and then cut into frozen sections with thicknesses of 8–10 µm at −20°C. The sections or NIH/3T3 cells were incubated in 0.1 M phosphate‐buffered saline (PBS) containing 10% normal goat serum for 2 h to block nonspecific binding and then cultured with a goat anti‐PDGFRα antibody (AF1062, 1:200; R&D Systems) and a rabbit anti‐Ki‐67 antibody (GB13030, 1:50; Wuhan Good Biotech Co.) or a rabbit anti‐PDGFRα antibody (1:1000; #3174; Cell Signaling Technology), and 24 h later a PAR2 (SAM11) antibody (1:50; sc‐13504; Santa Cruz Biotechnology, Inc.) in Triton X‐100 (Sigma Aldrich, 0.5%; USA) at 4°C. The samples were washed with 0.1 M PBS for 30 min and then incubated at room temperature with Cy3‐conjugated anti‐goat IgG (1:300; GB21404, Wuhan Good Biotech Co.), Alexa Fluor 488‐conjugated goat anti‐rabbit IgG (Jackson ImmunoResearch, 1:100), Alexa Fluor 488‐conjugated goat anti‐mouse IgG (A0428, 1:200; Beyotime Institute of Biotechnology) and DAPI (2 h). Images were obtained using a fluorescence microscope (ZEISS Axiovert 200).
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5

Colocalization of AjBNIP3 and Mitochondria

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To confirm the regulatory relationship between AjBNIP3 and mitophagy, we studied the colocalization relationship between AjBNIP3 and mitochondria. Briefly, coelomocytes cultured in 6-well plates were treated with LPS for 24 h at 16 °C. The treated cells were then stained with Mito-Tracker Red CMXRos (200 nmol/L) for 30 min, fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and blocked with 5% bovine serum albumin (BSA). The cells were incubated with anti-AjBNIP3 from mouse serum (1:200 dilution) at 4 °C overnight. After washing three times with PBS, the cells were incubated with secondary antibody Alexa Fluor 488 conjugated goat anti-mouse IgG (1:500 dilution, Beyotime, China) for 1.5 h at room temperature. After staining with 4’,6-diamidino-2-phenylindole (DAPI) for 5 min, the cells were visualized using a laser confocal microscope.
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6

Immunofluorescent Staining of Brain Sections

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Brains were removed and fixed with 4% paraformaldehyde at 4 °C overnight. Frozen sectioning was performed after sucrose gradient dehydration followed by blocking with 10% goat serum containing 0.5% Triton X-100 at room temperature for 30 min. Brain sections were incubated with different primary antibodies at 4 °C overnight, including anti-MPO (Abcam, ab90812, 1: 1000), anti-NeuN (Abcam, ab177487, 1: 1000), anti-CD31 (Abcam, ab222783, 1: 1000), anti-Iba-1 (Abcam, ab153696, 1: 1000), anti-GFAP (Abcam, ab7260, 1: 1000) antibodies. The sections were washed with PBS 3 times and incubated with the mixture of Alexa Fluor 488 conjugated goat-anti-mouse IgG (Beyotime, A0428, 1: 500) or Alexa Fluor 555 conjugated donkey-anti-rabbit IgG (Beyotime, A0453, 1: 500) for 1 h in darkness at room temperature, followed by staining with DAPI for 5 min. After being washed with PBS 3 times, sections were mounted with fluorescent mounting medium (Dako, S3023), and examined by a confocal laser scanning microscope (LSM 780, Carl Zeiss).
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7

Immunofluorescence Staining Protocol

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Cell cultures were fixed in 4% (v/v) paraformaldehyde (PFA, #P804537, Macklin, China) at 4°C overnight. Paraffin-embedded tissue was cut into 6 um sections. The samples were dewaxed and rehydrated, and antigen was retrieved with citric acid (#C805019, Macklin, China) and sodium citrate (#S818273, Macklin, China) solution. Then the samples were blocked with 2% bovine serum albumin (BSA; #A8020, Solarbio, China) buffer at 37°C for 1 h, followed by incubation of primary antibodies at 4°C overnight. The primary antibodies were shown in Table S2. The samples were incubated with fluorescently-labeled secondary antibodies (Alexa Fluor 488-conjugated goat anti-mouse IgG (Beyotime, China) or 488-conjugated goat anti-mouse IgG (Beyotime, China) at 1:500 in PBS at 37°C for 2 h. Samples were washed and incubated with propidium iodide (PI) at room temperature for 20 min. Finally, drop glycerol for mounting. Images were taken under a confocal microscope (Leica, Germany) at Chongqing University Analysis and Testing Center.
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8

Immunofluorescence Analysis of YAP

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Place the sterilized cell slides into a 24-well plate, and select cells in a logarithmic growth period to inoculate on the slides, 4×10 4 cells per well. After the cells adhered, the culture medium was discarded, fixed in methanol and permeabilized cells with 0.1% Triton-X-100 and blocked with 5% BSA. First bound with YAP mouse antibody, then stained with Alexa Fluor 488-conjugated goat anti-mouse IgG (Beyotime). Nuclear staining was performed with 4',6-diamidino-2-phenylindole (DAPI) solution. Cell imaging was performed with Leica SP-8 laser scanning confocal microscope (Leica, Germany).
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