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10 protocols using anti mmp1

1

Comprehensive Protein Analysis Workflow

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Western blotting was performed as previously described,35 (link) using anti-CDK5, anti-FAK, anti-p-FAK (Ser732), anti-PAK1, anti-p-PAK1 (Thr212), anti-ERK5, anti-p-ERK5 (Thr218/Tyr220) (Abcam), anti-p-ERK5 (Thr732), anti-p35 (Cell Signaling Technology, Danvers, MA, USA; anti-p-ERK5 Thr732 was custom-made from CST), anti-c-fos, anti-c-jun (Bioworld Technology, Louis Park, MN, USA), anti-c-myc, anti-VEGFA and anti-MMP1 antibodies (Proteintech, Chicago, IL, USA). Loading control was used with a mouse anti-β-Actin monoclonal antibody (Proteintech).
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2

Inhibition of Cartilage Degradation

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Kaempferol, collagenase, dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (Merck KGaA; Darmstadt, Germany). Fetal bovine serum (FBS) was obtained from Glico-BRL (Gaithersburg, MD, USA). Recombinant rat IL-1β was obtained from R&D systems (Minneapolis, MN, USA). Primary antibodies specific for MMP-3, COX-2, phosphorylated extracellular signal-regulated kinase (p-ERK), ERK, c-Jun N-terminal kinase (JNK), p-JNK, p38, p-p38 were obtained from Cell Signaling Technology Inc. (Beverly, MA, USA). Antibodies specific for iNOS, MMP13, Collagen II was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Anti-MMP1 was obtained from ProteinTech Group (Wuhan, China). Antibodies against glyceraldehyde-3-phosphate dehydrogenase (GAPDH), ADAMTS-5, Secondary antibodies and the cell counting kit-8 (CCK-8) were provided from Wuhan Boster Biological Technology, Ltd. (Wuhan, China).
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3

Western Blot Analysis of Fibrosis Markers

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PSCs or HP-1 cells were cultured for 24 h in the absence or presence of stimulators respectively. These cells were lysed using RIPA lysis buffer (Beyotime, China) containing protease inhibitor cocktail (Sigma, USA). Protein samples (15 μg each) from PSCs or HP-1 cells were separated on 10% SDS-PAGE gels, and transferred to nitrocellulose. After washing with Tris buffer saline containing 0.1% Tween 20 (TBS/T) and blocking with 2.5% non-fat milk, the membranes were separately incubated at 4℃ overnight with rabbit polyclonal anti-α-SMA, anti-CTGF, anti-Col1, anti-MMP-1, anti-MMP-2, anti-TIMP-2, anti-GAPDH antibodies (ProteinTech, USA). Blots were incubated for 1 h with HRP-linked goat anti-rabbit IgG (Beyotime), and washed extensively with TBS/T before detection using the ECL system (ThermoFisher Scientific, USA).
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4

Apatinib Mesylate Inhibits Matrix Metalloproteinases

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Apatinib mesylate tablets (AITAN®; 425 mg/tablet) were purchased from Hengrui Medicine Company (Jiangsu, China). Tablets were dissolved in 100% dimethyl sulfoxide (DMSO; MP Biomedicals, Santa Ana, CA, USA) to a concentration of 4 mmol/L and stored at –20°C. The stock solution was diluted to a working concentration with DMEM (Gibco, Grand Island, NY, USA), and the final DMSO concentration in cell culture was less than 0.1%. The BCA kit was purchased from Google Biotechnology Ltd. (Wuhan, China). The RNA extraction reagent TRIzol and the PCR reagent Power SYBR® Green PCR Master Mix were purchased from Life Technologies (Grand Island, NY, USA), and the PCR primers were synthesized by Google Biotechnology Ltd. (Wuhan, China). Anti-MMP-1, anti-MMP-2, anti-MMP-3, anti-MMP-7, anti-MMP-9, anti-TIMP-1, anti-TIMP-2, and anti-TIMP4 antibodies were purchased from Proteintech Group (Chicago, USA), and Anti-MMP-10, Anti-MMP-11, and Anti-MMP-16 antibodies were purchased from Biorbyt Ltd. (Cambridge, UK). Anti-TIMP-3 was purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). An NF-κB pathway sampler kit (9936T) was purchased from Cell Signaling Technology Inc. (Danvers, MA, USA).
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5

Comprehensive Protein Expression Analysis

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The procedures for western blotting were detailed in the supplementary material. Anti-CD9 (1:500), anti-CD63 (1:500), anti-CD81 (1:500), and anti-PLAU (1:500) were purchased from Santa Cruz Biotechnology. Anti-TSG101 (1:1000) and anti-MMP1 (1:2000) were bought from ProteinTech (Chicago, USA). anti-MMP12 (1:2000), anti-P16INK4a (1:3000), and anti-P21Cip1 (1:3000) were purchased from Servicebio (Wuhan, China). Anti-TIMP1 (1:1000), anti-p-PI3K (1:1000), anti-PI3K (1:1000), and the secondary antibodies (1:5000) were obtained from Cell Signaling Technology (Danvers, USA).
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6

Comprehensive Protein Expression Analysis

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The procedures for western blotting were detailed in the supplementary material. Anti-CD9 (1:500), anti-CD63 (1:500), anti-CD81 (1:500), and anti-PLAU (1:500) were purchased from Santa Cruz Biotechnology. Anti-TSG101 (1:1000) and anti-MMP1 (1:2000) were bought from ProteinTech (Chicago, USA). anti-MMP12 (1:2000), anti-P16INK4a (1:3000), and anti-P21Cip1 (1:3000) were purchased from Servicebio (Wuhan, China). Anti-TIMP1 (1:1000), anti-p-PI3K (1:1000), anti-PI3K (1:1000), and the secondary antibodies (1:5000) were obtained from Cell Signaling Technology (Danvers, USA).
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7

Western Blot Analysis of Cell Signaling Proteins

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SACC cells were lysed with Cell lysis buffer for Western and IP (WBIP) containing phenylmethanesulfonyl fluoride (PMSF). The protein concentration was determined by BCA assay. Protein samples were isolated by Sodium Dodecyl Sulfate PolyAcrylamide Gel Electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes, which were then incubated with anti-AJAP1 (1:5,000; Proteintech), anti-E-cadherin (1:5,000; Proteintech), anti-β-catenin (1:5,000; Proteintech), anti-c-Myc (1:2,000; Proteintech), anti-CyclinD1 (1:5,000; Proteintech), anti-MMP1 (1:1,000; Proteintech), anti-actin (1:10,000; Proteintech), and anti-GAPDH (1:10,000; Proteintech) overnight. Following incubation, the membranes were washed three times with Tris-Buffered Saline and Tween 20 (TBST) and incubated with HRP-conjugated goat anti-rabbit/mouse IgG for 1 h. After washing with TBST three more times, the blots were analyzed using a gel imaging system (BIO-RAD, USA).
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8

Alantolactone Modulates Inflammatory Response

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Alantolactone (HY-N0038) was obtained from MedChem Express (MCE). Recombinant mouse IL-1β cytokine was provided from R&D Systems (501-RL-010, United States). Solarbio supplied safranin O liquor (Beijing, China). Primary antibodies applied in this research were: anti-iNOS, anti-MMP-13 which were acquired from Abcam (Shanghai, China), anti-COX2, anti-LC3Ⅱ/Ⅰ, anti-P-STAT3, anti-P-P65, anti-P-IκB, anti-P/T-mTOR which were purchased from CST (Beverly, MA, United States), anti-STAT3, anti-MMP-1, anti-MMP-3, anti-ATG5, anti-P62, anti-P65, anti-IκB, anti-P/T-PI3K, anti-P/T-AKT, anti-GAPDH which were afforded from Proteintech Group (Wuhan, Hubei, China) and anti-ADAMTS5 which was supplied from Boster Biological Technology (Wuhan, Hubei, China). Secondary antibodies, Cy3 and FITC Conjugated AffiniPure Goat Anti-Rabbit IgG, DAPI staining solution, collagenase type II and trypsin were got from Boster Biological Technology (Wuhan, Hubei, China). HanBio Inc. (Shanghai, China) served the mRFP-GFP-LC3 adenoviral vectors.
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9

Protein Lysate Preparation and Antibody Analysis

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Total cellular protein lysates were prepared by harvesting the cells in a protein extraction buffer for 1 h at 4°C as described previously [24 (link)]. GAPDH expression was used as the protein loading control. Anti-Akt, phospho-Akt, phospho-Smad2 phospho-p70S6 K, anti-TGF-β, anti-Beclin 1 and anti-LC3 antibodies were obtained from Cell Signaling Technology (Ipswich, MA, USA). Anti-MMP-1, anti-MMP-9, anti-procollagen type 1 and anti-GAPDH antibodies were obtained from Proteintech (Rosemont, IL, USA); anti-Samd2/3 antibody was obtained from Santa Cruz (Dallas, TX, USA); and anti-p70S6 K antibody was obtained from Abcam (Cambridge, MA, USA).
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10

Protein Expression Analysis by SDS-PAGE

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Equal amount of protein from each group was fractionated by 8% or 10% sodium dodecylsulfate- polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a PVDF membrane (Millipore, Germany). Membranes were incubated with primary antibody overnight at 4°C, followed by horse radish peroxidase (HRP)-conjugated secondary antibodies. The antibodies used in this study were anti-integrin β1, anti-pFAK-Y397 (1:1000, Abcam), anti-FAK, anti-AKT, anti-pAKT-Ser473 (1:1000, CST), anti-MMP-1(1; 1000, proteintech, USA) and anti-β-actin (1:3000, proteintech). Proteins were detected using Clarity™ western ECL substrate (Bio-Rad Laboratories) and viewed by the imaging system (Universal hood III, Bio-Rad).
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