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Cy2 and cy3 conjugated secondary antibodies

Manufactured by Jackson ImmunoResearch
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Cy2 and Cy3 conjugated secondary antibodies are fluorescent-labeled antibody reagents used in immunodetection techniques. Cy2 and Cy3 are cyanine dyes that serve as fluorescent labels, enabling visualization and detection of target proteins or antigens in samples. These secondary antibodies bind to the Fc region of primary antibodies, providing a fluorescent signal for analysis.

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10 protocols using cy2 and cy3 conjugated secondary antibodies

1

Immunofluorescence Staining of Cortical Neurons

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For immunofluorescence staining of primary cortical neurons, cultured neurons at DIV4 were permeabilized 5 min with 0.2% v/v triton-X100 and blocked for 1 hr at room temperature with 5% normal donkey serum. Anti-pErbB4 (1:1000) and anti-PV(1:2000; Swant) staining was performed overnight at 4°C followed by rinsing with PBS and incubation for 1 hr at room temperature with Cy2 and Cy3 conjugated secondary antibodies (Jackson Immunoresearch). Cells were then washed and mounted using ProLong® Gold Antifade Mountant containing DAPI (Molecular Probes). Images were taken using a LCM confocal microscope (Zeiss).
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2

Immunostaining of Embryonic Structures

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Embryos in the morpholino validation experiment were fixed in 3% PFA in PBS for 2 hours, washed in PBST (1X PBS and 0.1% Triton X-100) and then stained with phallodin-647 (Invitrogen). Embryos used for centriole analysis were fixed in 100% ice-cold methanol for 48 hours at −20°C. Embryos were rehydrated in a methanol series, washed in PBST, and blocked in 10% heat-inactivated goat serum for 2 hours. Mouse Anti-centrin (EMD Millipore 04–1624) and rabbit anti–ZO-1 (61–7300; Invitrogen) primary antibodies were used, followed by Cy-2 and Cy-3-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, Inc.).
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3

Immunofluorescence Staining of Cortical Neurons

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For immunofluorescence staining of primary cortical neurons, cultured neurons were transfected with control or TG2 lentiviral particles using Effectene Transfection Reagent (Qiagen) 48 h before BDNF (100 ng/mL) treatment. Cells were washed and permeabilized for 5 min with 0.2% v/v triton-X100 and blocked for 1 hr at room temperature with 5% normal donkey serum. Anti-TrkB (abcam ab52191; 1:1000) and anti-Lamp1 (DSHB (1D4B); 1:500) staining was performed overnight at 4°C followed by rinsing with PBS and incubation for 1 hr at room temperature with Cy2 and Cy3 conjugated secondary antibodies (Jackson Immunoresearch). Cells were then washed and mounted using ProLong® Gold Antifade Mountant containing DAPI (Molecular Probes). Confocal images were obtained using a Zeiss LSM 510 META confocal microscope. Pictures were taken under a 40× Plan-Apochromat objective.
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4

Immunofluorescence Staining of Cortical Neurons

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For immunofluorescence staining of primary cortical neurons, cultured neurons were transfected with control or TG2 lentiviral particles using Effectene Transfection Reagent (Qiagen) 48 h before BDNF (100 ng/mL) treatment. Cells were washed and permeabilized for 5 min with 0.2% v/v triton-X100 and blocked for 1 hr at room temperature with 5% normal donkey serum. Anti-TrkB (abcam ab52191; 1:1000) and anti-Lamp1 (DSHB (1D4B); 1:500) staining was performed overnight at 4°C followed by rinsing with PBS and incubation for 1 hr at room temperature with Cy2 and Cy3 conjugated secondary antibodies (Jackson Immunoresearch). Cells were then washed and mounted using ProLong® Gold Antifade Mountant containing DAPI (Molecular Probes). Confocal images were obtained using a Zeiss LSM 510 META confocal microscope. Pictures were taken under a 40× Plan-Apochromat objective.
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5

Immunostaining of Embryonic Structures

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Embryos in the morpholino validation experiment were fixed in 3% PFA in PBS for 2 hours, washed in PBST (1X PBS and 0.1% Triton X-100) and then stained with phallodin-647 (Invitrogen). Embryos used for centriole analysis were fixed in 100% ice-cold methanol for 48 hours at −20°C. Embryos were rehydrated in a methanol series, washed in PBST, and blocked in 10% heat-inactivated goat serum for 2 hours. Mouse Anti-centrin (EMD Millipore 04–1624) and rabbit anti–ZO-1 (61–7300; Invitrogen) primary antibodies were used, followed by Cy-2 and Cy-3-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, Inc.).
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6

Immunofluorescence and Electron Microscopy of Paraffin Kidney Sections

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For paraffin sections, samples were dehydrated and embedded in paraffin by standard procedures. Paraffin sections (2 µm) were cut on a Leica SM 2000R (Leica Microsystems, Wetzlar, Germany). After rehydration, sections were unmasked in citrate buffer (0.1 M, pH 6.0) by heating for 5 min in a pressure cooker. The nuclei were stained with 1 mg/100 ml Hoechst 33342 (Sigma-Aldrich) for 30 min. For immunofluorescence double-staining, samples were incubated with an antibody against zyxin (HPA004835 for human and HPA073497 for mice FFPE material; both from Sigma-Aldrich; IF dilution 1:100) and synaptopodin (61094, Progen Biotechnik GmbH, Heidelberg, Germany; IF dilution 1:100) overnight. Samples were washed with 1x PBS for 3 × 5 min and incubated with Cy2- and Cy3-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories; IF dilution 1:300) for 1 h. After additional washing, the samples were mounted in Mowiol (Carl Roth) for fluorescence microscopy. PAS stainings were performed by standard procedures. For transmission electron microscopy, kidneys were embedded in EPON 812 (SERVA, Heidelberg, Germany). Ultrathin sections were cut and contrasted with 5% uranyl acetate and lead citrate. All grids were examined with a LIBRA® 120 transmission electron microscope (Carl Zeiss Microscopy, Jena, Germany). Scanning electron microscopy was performed according to Artelt et al. 80 (link)
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7

Immunoblotting and Immunofluorescence Reagents

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Antibody to LPL (SC-16657; Goat) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies to GAPDH and TNF-α receptor 1 (TNFR1) were purchased from R & D Systems (Minneapolis, MN). Protein estimation reagent, molecular weight standards, and PAGE reagents were bought from Bio-Rad (Hercules, CA). Cy2- and Cy3-conjugated secondary antibodies were purchased from Jackson Immunoresearch (West Grove, PA). HRP-conjugated secondary antibodies for immunoblotting and the phosphoserine (p-Serine) antibody were purchased from Abcam (Cambridge, MA). Mounting solutions for mounting of coverslips were purchased from Thomas Scientific (Swedesboro, NJ) or Vector Labs (Burlingame, CA). Rhodamine-phalloidin and all other chemicals were purchased from Sigma (St. Louis, MO).
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8

Antibody Acquisition and Characterization

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Antibody to L-plastin (SC-16657; Goat) was bought from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Antibodies to GAPDH was purchased from R & D Systems (Minneapolis, MN) and Sigma (St. Louis, MO). Protein estimation reagent, molecular weight standards for proteins, and PAGE reagents were bought from Bio-Rad. Cy2- and Cy3-conjugated secondary antibodies were purchased from Jackson Immunoresearch (West Grove, PA). HRP-conjugated secondary antibodies for immunoblotting were obtained from GE Healthcare. Antibody to phosphoserine (p-Serine) was bought from Zymed laboratories (61–8100) or Millipore (AB1603). Alizarin red solution was bought from Life-line Cell Technology (CM-0058; Fredrick, MD) Rhodamine-phalloidin and other chemicals were purchased from Sigma (St. Louis, MO).
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9

Immunofluorescence Imaging of Macrophages and Neurons

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Areas surrounding the infarction were visualized with primary antibodies incubated at 4°C overnight to the macrophage marker Iba1 (WAKO Chemicals, Richmond, VA, USA, #019-19741, rabbit anti-rat,1:500 dilution) and neuronal marker NeuN (Millipore Canada Ltd., Etobicoke, Ontario, Canada, MAB377, mouse anti-mouse, 1:500 dilution) by immunofluorescence as previously described (Chen et al., 2007). Cy2 and Cy3 conjugated secondary antibodies were obtained from Jackson Laboratories (Bar Harbour, ME, USA) and used at 1:1,000 dilution. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI). Iba1-positive cells were imaged on a Zeiss (Oberkoken, Germany) AxioImager Z1 fluorescence microscope and counted in three independent fields at 20× magnification from six sections per mouse.
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10

Comprehensive Antibody Source Protocol

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Antibody to LPL (SC-16657; Goat) was bought from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Antibodies to GAPDH and TNF-α receptor 1 (TNFR1) were purchased from R & D Systems (Minneapolis, MN). Protein estimation reagent, molecular weight standards for proteins, and PAGE reagents were bought from Bio-Rad (Hercules, CA). Molecular weight markers have also been bought from Promega (Madison, WI). Cy2- and Cy3-conjugated secondary antibodies were purchased from Jackson Immunoresearch (West Grove, PA). HRPconjugated secondary antibodies for immunoblotting and phosphoserine (p-Serine) antibody were bought from Abcam (Cambridge, MA). Mounting solutions for mounting of coverslips were bought from Thomas Scientific (Swedesboro, NJ) or Vector Labs (Burlingame, CA). Rhodaminephalloidin and all other chemicals were purchased from Sigma (St. Louis, MO).
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