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7 protocols using peg8000

1

Establishing HBV Infection Model using HepG2-NTCP Cells

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Lentivirus encoding sodium taurocholate co-transporting polypeptide (NTCP) was purchased from OBiO Technology (Shanghai, China). The virus was used to infect HepG2 cells in the presence of polybrene (5 mg/ml). After infection for 48 h, the cells were cultured in DEME medium containing 5 mg/ml puromycin (#1780151, GIBCO) for 7 days to generate a HepG2-NTCP cell line. The stable HepG2-NTCP cell line was confirmed by qRT-PCR and Western blotting. HBV infection was conducted as described previously.34 (link) The HBV used in this study was derived from HepG2.2.15 cells and was quantified by qRT-PCR. HepG2-NTCP cells were preincubated for 24 h with 3% DMSO (#D2650, Sigma) and then infected with HBV in the presence of 4% PEG8000 (#A600433, Sangon Biotech) and 3% DMSO for 16 h.
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2

Phage SH-KP152226 Purification Protocol

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The phage SH-KP152226 was enriched at 4°C overnight by using polyethylene glycol (PEG) 8000 (Sangon Biotech, China) and further purified by CsCl density gradient (1.33, 1.45, 1.50, and 1.70 g/cm3) ultracentrifugation at 4°C and 20,000×g for 4 h (Beckman, JA-25.50, USA). Then, the layer containing the enriched phage was collected using a syringe, dialyzed against SM buffer, and stored at 4°C.
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3

Protein Phase Separation Assay

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Purified proteins were diluted to varying concentrations in BRB80 buffer (pH 6.8) containing 80 mM PIPES, 1 mM MgCl2, and 1 mM EGTA with the indicated salt concentrations. Protein solution (10 μl) was loaded onto a glass slide and imaged using an LSM880 microscope (Zeiss). Then, 3% PEG-8000 (Sangon Biotech, A600433) was added in phase separation assays; 1,6-hexanediol (Sigma, 88571) was used at 5%.
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4

Amplification and Titration of Adeno-X Viruses

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Adeno-X 293 cells (purchased from Clontech) were plated at a density of 1 × 106 cells per 60 mm culture plate one day before transfection. After digestion by PacI, 10 μg of linearized OV DNA was transfected into 60 mm culture plate with Lipofectamine 3000 transfection reagent. To collect the VPs, cells were collected one week after transfection, centrifuged at 1500 × g for 5 min at room temperature and re-suspended in 500 μL of 1 × PBS. Then cells were lysed with three consecutive ‘freeze-thaw’ cycles. To amplify virus production, the lysate was transferred to a fresh plate with 6 × 106 Adeno-X 293 cells. The virus production can be further amplified by repeating the above procedure to collect more cell lysate. The supernatant containing viruses was concentrated by PEG8000 (Sangon Biotech) to a final volume of 5 mL, and then centrifuged with CsCl gradients (1.4 and 1.2 g mL−1) at 100,000 × g for 8 h. To measure the virus titer, 5 × 105 Adeno-X 293 cells were seeded in 12-well plate and infected with the 1 μL of purified virus. Cells were collected 6 h after infection, and the total DNA was extracted by using DNeasy Blood & Tissue kit (Qiagen). Quantitative PCR (qPCR) were performed to estimate the virus titer by using qL2 primers shown in Supplementary Table 1.
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5

ZMAT2 Protein-RNA Phase Separation

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To prepare the ZMAT2 protein solution, it was diluted with PBS or PBS containing 0.1-0.2 mg/ml BSA to create a concentration gradient. Subsequently, PEG8000 (A660434-0500, Sangon Biotech) was added to the solution at a final concentration of 10% (M/V). For the preparation of the protein-RNA complex, both the ZMAT2 solution and RNA (concentration gradient) were diluted in PBS. After incubation at room temperature for 5-10 min, PEG8000 was added to the solution, achieving a final concentration of 10-15% (M/V). If the peptide exhibits a tendency for phase separation, the solution is expected to become cloudy or opaque immediately at room temperature. The formation of liquid droplets was observed using a fluorescence microscope or laser scanning confocal microscope. RNA sequence for ZMAT2/RNA phase separation: Truncated TRIM28 mRNA with ZMAT2 binding motif-UUUCUCCAUUUUCUAAGGAGAUGAUCCCUACUCAAGUGCAGAGCC; Truncated TRIM28 mRNA without ZMAT2 binding motif-AUGGCGGCCUCCGCGGCGGCAGCCUCGGCAGCAGCGGCCUCGGCC.
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6

Phage Visualization via Electron Microscopy

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The phage morphology was visualized under a transmission electron microscope (TEM, Tecnai 12, Tecnai, Eindhoven, the Netherlands). High phage titers were concentrated using cesium chloride (CsCl, Sangon Biotech Co., Ltd, Shanghai, China) density gradient centrifugation and 10% polyethylene glycol (PEG) 8000 (Sangon Biotech Co., Ltd, Shanghai, China) precipitation, as previously described (Byun et al., 2022 (link)). Afterward, 30 μL of concentrated phage suspension was applied to a 400-mesh copper grid with a membrane and allowed to adsorb for 10 min; a filter paper was used to absorb excess liquid around the copper mesh. Then, the resulting product was dyed with 2% phosphotungstic acid (PTA, Aladdin Biochemical Technology Co., Ltd, Shanghai, China) for 10 min, and excess PTA was blotted off the filter paper and dried out under an infrared lantern.
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7

Recombinant Insulin Preparation Protocol

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Recombinant human insulin was purchased from Novo Nordisk (Bagsvaerd, Denmark). 1,6-Hexanediol was from Sangon Biotech (Cat No. A100159), and PEG8000 from Sangon Biotech (Cat No. A601513). Live-cell nucleus dye Hoechst from Beyotime Biotech (Cat No. C1022). Ni-NTA resin (Cat No. SA004010) was bought from Smart-Lifesciences (Changzhou, China). Palmitate was from Sigma-Aldrich (Cat No. P9417). All other chemicals were purchased from Sigma-Aldrich (Shanghai, China) or Sangon Biotech (Shanghai, China).
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