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Brightgreen 2x qpcr mastermix

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BrightGreen 2X qPCR MasterMix is a ready-to-use solution for quantitative real-time PCR (qPCR) experiments. It contains all the necessary reagents, including a DNA polymerase, dNTPs, and a fluorescent dye, for the amplification and detection of target DNA sequences.

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15 protocols using brightgreen 2x qpcr mastermix

1

Amplification of Conserved Regions in TaHMW1D

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Primers amplifying conserved regions (CONS-F (5′- TCCTCTTTGCGGCAGTAGTC -3′), CONS-R (5′-CTTGGCGCTAACATCTCGGA-3′), located in signal and N-terminal peptide, present in complete TaHMW1D and its transcript variants) and deleted regions (REP1-F (5′-GGGCAAATCCCAGCTTCT-3′), REP1-R (5′-CCTTTGTCCTGGCTGTCCTT-3′), located at repetitive region 4) were used (Figure 8). PCR primers were designed using NCBI primer-BLAST (https://www.ncbi.nlm.nih.gov/tools/primer-blast/ (accessed on 19 June 2018)). qRT-PCR was conducted using cDNA in a 10 µL mixture containing BrightGreen 2X qPCR MasterMix (abm, Canada). Initial denaturation was done at 95 °C for 10 min, which was followed by 40 cycles of 95 °C for 15 s, 57 °C for 1 min, 72 °C for 10 s, and a final extension at 72 °C for 5 min. Three replicates (biological and technical) were run for each stage.
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2

Gene Expression Analysis of Melanoma Cells

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Total RNA was extracted from untreated WM-266-4 cells and WM 266-4 cells treated with the IC50 of ORT, DTIC, or the ORT/DTIC combination, using the TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc.). Complementary DNA (cDNA) was synthesized from total RNA using a first-strand synthesis kit (GeneAll). The cDNA concentration was determined using a NanoDrop spectrophotometer (Coliri LB 915; JC Bio). qRT-PCR was performed using CFX Connect Real-Time PCR (Bio-Rad) and BrightGreen 2X qPCR MasterMix (ABM, Vancouver, Canada), with 50 amplification cycles. In the present study, the expression levels of NOTCH2, NOTCH3, MYC, CCND1, BAX, CASP3 and CASP9 were comparatively analyzed among different treatment groups. The primers used in the qRT-PCR analysis are listed in Table I. The expression levels of target genes were normalized to those of GAPDH (19 (link)–24 (link)). Relative gene expression levels were calculated using the 2ΔΔCt method (25 (link)).
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3

Quantifying mRNA Levels via RT-PCR

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Total RNA was extracted from cell cultures using Omnizol (Euroclone, Italy). The mRNA levels were measured by RT-PCR and by 5X ALL-IN-ONE RT MASTERMIX (ABM, Canada), and the Real-time PCR assays were performed with BrightGreen 2X qPCR MasterMix (ABM, Canada) and run on a LineGene 9600 (Bioer Technology, China). All of the reagents were used according to the manufacturer’s instructions. We designed primer pairs for RT-PCR reactions with Primer Express software (Applied Biosystems, Italy) and used the mRNA sequences as templates from the Nucleotide DataBank (National Center for Biotechnology Information, MD, USA) to design primer pairs. Primer sequences are listed in Supplementary file 3. We used the 2-ΔΔCT method as a relative quantification strategy for quantitative real-time PCR data analysis.
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4

Total RNA Extraction and RT-PCR Analysis

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Total RNA was extracted from cell cultures using Trizol (Sigma Aldrich, MO, USA). The mRNA levels were determined by RT-PCR, employing the 5X ALL-IN-ONE RT MASTERMIX (cod G486, ABM, Canada). Real-time PCR assays were conducted using BrightGreen 2X qPCR MasterMix (ABM, Canada) and run on a LineGene 9600 instrument (Bioer Technology, PRC). All reagents were used following the manufacturer's instructions.
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5

Breast Cancer Gene Expression qPCR Assay

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Total RNA of breast cancer cells was isolated with TRIzol reagent (Invitrogen) and was reverse-transcribed to cDNA using M-MLV reverse transcriptase (Promega). Quantitative PCR was performed using the BrightGreen 2X qPCR MasterMix (abm) on the CFX96 Real-Time System (Bio-Rad). GAPDH was served as the internal control. The primers used in this study are the follows: S6K1, forward 5′-GCCTCCCTACCTCACACAAG-3′, reverse 5′-CCACCTTTCGAGCCAGAAGT-3′; c-Myc, forward 5′-GGCTCCTGGCAAAAGGTCA-3′, reverse 5′-CTGCGTAGTTGTGCTGATGT-3′; cyclin E1, forward 5′-GCCAGCCTTGGGACAATAATG-3′, reverse 5′-CTTGCACGTTGAGTTTGGGT-3′; GAPDH, forward 5′-GCTGAGAACGGGAAGCTTGT-3′, reverse, 5′-GCCAGGGGTGCTAAGCAGTT-3′.
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6

RNA Extraction and Gene Expression Analysis

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Total RNA was extracted using the RNeasy Plus Kit (Qiagen) according to the manufacturer’s protocol. Complementary DNA was then generated using the 5X RT MasterMix (ABM). Gene expression to validate RNA-seq analysis was quantified by quantitative reverse transcriptase–polymerase chain reaction using BrightGreen 2X qPCR MasterMix (ABM) on a QuantStudio 3 reverse-transcriptase PCR system (Thermo Fisher Scientific). Fold change in gene expression compared to endogenous controls was calculated using the ddCT method. Primer sequences are indicated in Supplementary Table 1 [28 (link)].
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7

Gene Expression Profiling of Wheat

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Gene expression of the candidate genes was observed in specific tissue or under cold temperature. RNA was extracted from specific tissues of wheat at heading stage, which were the first leaf from the ground, stem, peduncle, flag leaf, and spike. In order to observe the gene expression under cold temperature, three-leaf stage wheat seedlings grown at 25 °C were exposed to 4 °C. The RNA extraction was conducted using TRIzol (Thermo Fisher Scientific Co., USA) and cDNA was synthesized using the PrimeScript™ 1st strand cDNA synthesis kit (Takara Bio Inc., Japan) according to the manufacturers’ manuals, respectively. Each gene specific PCR primers was designed using the NCBI Primer-BLAST (https://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi? LINK_LOC=BlastHome) (Table S5). Real-time PCR was performed using BrightGreen 2X qPCR MasterMix (ABM, Canada) in a CFX-96 real-time PCR machine (Bio-Rad, USA). The Ct values obtained for each gene were normalized depending on the internal gene control, and relative gene expression levels were calculated using the 2−ΔΔCT method as previously described [71 (link)]. Statistical analysis was performed in R and differences in gene expression were evaluated with Student’s t-test or one-way ANOVA (analysis of variance) followed by a Tukey post hoc test.
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8

Quantification of mRNA Levels via RT-PCR

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RNA was extracted from cell samples with Omnizol (EuroClone, Pero (MI), Italy). The mRNA levels were determined by RT-PCR and by 5X All-In-One RT MasterMix (ABM, Richmond, BC, Canada), and the real-time PCR assays were carried out with BrightGreen 2X qPCR MasterMix (ABM, Vancouver, BC, Canada) and run on a LineGene 9600 PCR detection system (Bioer Technology, Hangzhou, China). All of the reagents were used according to the manufacturer’s instructions. We designed primer pairs for RT-PCR reactions with Primer Express software (Applied Biosystems, Milan, Italy) and used the mRNA sequences as templates from the Nucleotide DataBank (National Center for Biotechnology Information, Bethesda, MD, USA) to design primer pairs. Primer sequences are available upon request. We used the 2-ΔΔCT method as a relative quantification strategy for quantitative real-time PCR data analysis.
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9

Quantitative Real-Time RT-PCR Analysis

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Total RNA was extracted from cell cultures using a RNeasy Mini Kit (Qiagen) following the manufacturer's instructions. The quality and quantity of isolated RNA were analysed spectrophotometrically using a Nanodrop (Thermo Fisher). We used sequences of mRNAs from the Nucleotide Data Bank (National Center for Biotechnology Information) to design primer pairs for real‐time RT‐qPCR reactions (Primer Express v. 3.0, Applied Biosystems). The primer sequences are reported in Table 2. cDNA synthesis was performed by 5X ALL‐IN‐ONE RT MASTERMIX (ABM). We used appropriate regions of GAPDH cDNA as controls and ran real‐time PCR assays on a LineGene 9600 machine (Bioer Technology). We carried out reactions according to the manufacturer's instructions using a BrightGreen 2X qPCR MasterMix (ABM). We used the 2−∆∆CT method as a relative quantification strategy for quantitative real‐time PCR data analysis.
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10

RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted using RNeasy Plus Kit (Qiagen) according to manufacturer's protocol. cDNA was then generated using the 5X RT Mastermix (ABM, Vancouver, Canada). Gene expression to validate RNA-seq analysis was quantified by qRT-PCR using BrightGreen 2X qPCR MasterMix (ABM, Vancouver, Canada) on a QuantStudio 3 real-time PCR system (Thermo Fisher Scientific). Fold change in gene expression compared to endogenous controls was calculated using the ddCT method. Primer sequences are indicated in Supplemental Table 2.
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