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Hatf00010

Manufactured by Merck Group
Sourced in United States, Germany, China

The HATF00010 is a laboratory equipment product manufactured by Merck Group. It serves as a fundamental tool for various scientific applications. The core function of this product is to facilitate precise and controlled sample handling and processing in a laboratory setting. Further details on the specific intended use or applications of this product are not available.

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83 protocols using hatf00010

1

Western Blot Analysis of Innate Immune Signaling

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Cells or tissues were harvested, and 90 μg of total protein per sample was separated by gel electrophoresis and transferred to a hybridization nitrocellulose membrane (HATF00010, Merck, Darmstadt, Germany). The membrane was incubated overnight with primary antibodies (Table 1) at 4 °C. Before incubation with the fluorescence-conjugated anti-rabbit IgG secondary antibody (1:8000, 926-32211, LI-COR Biosciences, NE, USA), the membranes were washed with phosphate-buffered saline Tween (PBST) three times. Western blot bands were analyzed with an Odyssey imaging system (LI-COR, Inc., Lincoln, NE, USA).

Antibodies for western blot.

Anti-bodyCompanyCatalog NumberDilution ratio
cGASGene TexGTX028741:1000
STINGGene TexGTX852661:1000
IRF3Gene TexGTX543661:500
p-IRF3Cell Signaling Technology#290471:500
TBK1Cell Signaling Technology#38066 S1:1000
p-TBK1Cell Signaling Technology#35041:1000
NLRP3Cell Signaling Technology#151011:1000
GSDMDABclonal TechnologyA207281:500
GSDMD-NABclonal TechnologyA173081:500
β-ActinGene TexGTX1096391:3000
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2

Protein Extraction and Western Blotting

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Pancreatic tissues were ground in liquid nitrogen and then sonicated (power 20%, 5 seconds on, 5 seconds off, total time 5 minutes) in lysis buffer (2% SDS, 10% glycerol, 10 mM Tris (pH 6.8) and 100 mM DTT). The tissue suspension was then centrifuged for 10 minutes (4°C, 12,000 rpm). The supernatant was removed and boiled for 10 minutes. Protein lysates were resolved on NuPAGE™ 4%‐12% Bis‐Tris Mini Protein Gel (#NP0336BOX; Invitrogen) and transferred to 0.45 μm nitrocellulose membranes (#HATF00010; Merck). Protein samples were normalized to GAPDH. Antibodies utilized are listed in Table 1. Imaging was taken using LI‐COR Odyssey CLx.
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3

Quantifying Type I Collagen Secretion

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To determine the level of type I collagen secreted from control and CHX-treated MEFs, western blot analysis was performed on the cell lysate and conditioned media according to Shi
et al.
[17] (link). The samples were mixed with 4×SDS reducing sample buffer containing 40% glycerol, 250 mM Tris-HCl, pH 6.8, 8% sodium dodecyl sulfate, 0.04% bromophenol blue, and 20% 2-mercaptoethanol. The samples were then heated at 100°C for 10 min and subjected to 7.5% or 10% SDS-PAGE. After electrophoresis, proteins were transferred to a nitrocellulose membrane (HATF00010; Merck Millipore, Billerica, USA), which was blocked with 5% BSA in Tris-buffered saline (TBS) with 0.1% Tween-20 (TBST) at room temperature (RT) for 3 h and then incubated with anti-type I collagen antibody (0.4 μg/mL), anti-P4HA1 (1 μg/mL), anti-P4HA2 (1 μg/mL), or anti-actin antibody (0.2 μg/mL) overnight at 4°C. Bound primary antibodies were detected with HRP-conjugated rabbit anti-goat, goat anti-rabbit or anti-mouse IgG secondary antibodies (0.12 μg/mL). The amount of type I collagen was quantified by densitometry using ImageJ software (NIH) and was normalized to actin loading controls.
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4

Protein Extraction and Analysis

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Cell lysis was performed on collected cell samples using Beyotime (Shanghai, ST506). The protein concentration was quantified by the BCA protein assay kit (Beyotime, Shanghai, P0012). Finally, the protein samples were separated by SDS-PAGE and transferred to the NC membrane (Merck Millipore, HATF00010) for detection with an appropriate proportion of TBS diluted primary antibody.
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5

Western Blot Analysis of Flag-tagged Proteins

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Proteins were separated by 10% SDS-PAGE gels and transferred onto a nitrocellulose membrane (HATF00010, Merck-Millipore). After blocking with 5% (wt/vol) skimmed milk for 2 h, membranes were incubated with anti-flag mAb (F1804, SLCD6338, Sigma-Aldrich) produced in mice for 1 h at RT. Followed y washing it three times with PBS, containing 0.05% Tween 20. Then, the membranes were incubated with IRDye 800CW goat anti-mice IgG (926–32212, D20427–25, LI-COR Biosciences) and goat anti-human IgG (Fc-specific) antibodies (925–32232, C50326–05, LI-COR Biosciences) for 1 h at RT. Finally, the membrane blots were scanned using an Odyssey infrared imaging system (LI-COR Biosciences).
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6

Quantitative Western Blot Analysis

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Total proteins were extracted by RIPA lysis buffer (P0013B, Beyotime, Shanghai, China) at 4 °C. Protein concentration was then measured using an Enhanced BCA Protein Assay Kit (P0010S, Beyotime, Shanghai, China). Protein samples were mixed proportionally with 5 × loading buffer (P06M18, Gene-Protein Link, Beijing, China) and boiled at 100 °C for 5 min. Subsequently, 40 µg of protein was separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a nitrocellulose membrane (HATF00010, Merck-Millipore, Darmstadt, Germany). Membranes were blocked by 5% skimmed milk for 2 h and then incubated with primary antibody (Table S1) at 4 °C overnight. Then, the membranes were incubated with a horseradish peroxidase-conjugated secondary antibody (Table S1) for 2 h at room temperature. Finally, the films were exposed by Chemistar High-signal ECL western blotting substrate (180–501, TANON, Shanghai, China) and the quantitative analysis was carried out with ImageJ software.
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7

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cells by using boiling buffer [10 mM Tris-HCl (pH 7.4), 1 mM Na3VO4, and 1% SDS]. Nucleoprotein was extracted using a cytoplasmic and nuclear extraction kit (SC-003, Invent Biotechnologies, MN, USA). The proteins were separated using sodium dodecyl sulfate‒polyacrylamide gel electrophoresis (SDS‒PAGE) and transferred to nitrocellulose membranes (HATF00010, Merck Millipore, Germany). The membranes were blocked in Tris-buffered saline (TBS) supplemented with 5% nonfat milk at room temperature for an hour before overnight hybridization with appropriate concentrations of primary antibodies (Supplementary Table S2). The membrane was then incubated with the corresponding secondary antibody for 1 h at room temperature. An enhanced chemiluminescent substrate (AR1197, Boster, Wuhan, China) was used to detect the signal of targeted proteins on a Tanon Imaging System.
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8

Quantitative m6A RNA Detection

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Total RNAs were extracted, and the concentrations were adjusted by serial dilution to 100 ng/μL and 250 ng/μL for one assay. Total RNAs were denatured at 95°C for 3 min to disrupt any secondary structures. Then, 2 μL of serially diluted RNAs was dropped onto a nitrocellulose filter membrane (Merck Millipore, HATF00010) and crosslinked by ultraviolet for 1 h. After this, the membrane was washed and blocked in blocking buffer (5% milk in phosphate-buffered saline with 0.1% Tween 20) for 1 h at room temperature and subsequently incubated overnight at 4°C with anti-m6A antibody (Proteintech, 68055-1-Ig). After washing twice, HRP-linked secondary antibody was diluted 1:5000 and incubated with the membranes for 1 h at room temperature and exposed to ECL substrate. The same amount of total RNAs were spotted on the membrane, stained with 0.02% methylene blue in 0.3M sodium acetate (pH 5.2) for 2 h at room temperature and washed with ribonuclease-free water for 5 h.
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9

Immunoblotting of Protein Modifications

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Proteins were dispersed by SDS-PAGE and transferred to nitrocellulose membranes (Merck Millipore, HATF00010). The membranes were blocked with 5% BSA at room temperature (RT) for 1 h and subsequently incubated with primary antibodies [STAT5 (Santa Cruz, sc-1081), p-STAT5 (Cell Signaling Technology, CST, 9314 s), HK1 (CST, 2024t), AKT (CST, 4685 s), p-AKT (CST, 4058 s), PFKP (CST, 8164t), PDHA (CST, 3205t), β-actin (Santa Cruz, sc-47778), E3BP (Santa Cruz, sc-377255), Histone H3 (CST, 14269 s), H3K18 lac (PTM Bio, PTM-1406RM), H4K5 lac (PTM Bio, PTM-1409), H4K8 lac (PTM Bio, PTM-1415RM), H4K12 lac (PTM Bio, PTM-1411RM), Pan-Kla (PTM Bio, PTM-1401RM) and Flag-tag (ZenBio, 384091)]. After incubation of secondary antibodies, immunoreactive bands were monitored by the chemiluminescent imaging system (Tanon Science & Technology).
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10

Western Blot Analysis of Spinal Cord Proteins

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Spinal cord tissue protein was extracted using RIPA lysis (P0013K, Beyotime Institute of Biotechnology, China) added with phosphatase and protease inhibitor cocktail (Thermo Scientific, USA). Protein quantification was determined by the Bradford method. Tissue protein extracts were denatured in boiled water bath and then loaded into the lane of sodium dodecyl sulfate polyacrylamide gels. After electrophoresis, the protein was separated and then transferred onto nitrocellulose membranes (HATF00010, Merck Millipore, Germany). The membranes loaded with target proteins were blocked in 5% nonfat milk for 2 h and incubated in primary antibody buffer at 4°C overnight. After primary antibody incubation, the membranes were incubated in HRP-conjugated secondary antibody buffer for 2 h at room temperature. Final protein bands were visualized with the Immobilon Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA).
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