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47 protocols using n n diisopropylethylamine dipea

1

FMOC-Lysine Activation and Coupling

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Example 1

Fluorenylmethyloxycarbonyl (FMOC) and Monomethoxytrityl (MMTr) protected L-lysine (15 g), N-hydroxysuccinimide (3.23 g, 1.2 eq)(Sigma-Aldrich, Cat #130672) and 1-hydroxybenzotriazole hydrate (HOBt) (˜0.19 g, 0.05 eq))(Sigma-Aldrich, Cat #711489) were added to DCM (75 mL) at room temperature (rt). The reaction mixture was then cooled in an ice bath to ˜5° C. followed by addition of N,N-Diisopropylethylamine (DIPEA) (0.30 mL, 0.075 eq.))(Sigma-Aldrich, Cat #387649) and N-(3-Dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (5.83 g, 1.3 eq.)) (Sigma-Aldrich, Cat #03450) then stirring of the resulting reaction mixture at room temperature overnight. The reaction mixture was then washed with water (45 mL×2), dried over anhydrous sodium sulfate and evaporated in vacuo. Dioxane (45 mL), 0-alanine (2.29 g, 1.1 eq.) (Sigma-Aldrich, Cat #146064), N,N-Diisopropylethylamine (DIPEA) (4.5 mL, 1.1 eq.))(Sigma-Aldrich, Cat #387649) and deionized water (22.5 mL) were then added to the resulting residue. After stirring at rt overnight, DCM (225 mL) was added and then washed with HCl/water (0.4%, 225 mL) and then water (225 mL). The organic solution was dried over anhydrous sodium sulfate and concentrated to provide crude Compound 1A. Analytical LC-MS: tR=1.93 min, m/z (ES+) found 712.5.

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2

Peptide Synthesis and Antibody Labeling

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All chemicals used in this study were analytical grade. Protected L-amino acids were purchased from Novabiochem (Laufelfingen, Switzerland). Rink amide MBHA resin, N,N-diisopropylethylamine (DIPEA), dicholoromethane (DCM), piperidine, and trifluoroacetic acid (TFA) were purchased from Merck (Hohbrunn, Germany). 1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo [4,5-b]pyridinium-3-oxid hexafluorophosphate (HATU) was purchased from Mimotopes (Melbourne, Australia). Pentanoic acid, poly (methyl acrylate)-azide terminal (PMA), secondary antibody IgG, and IgA were purchased from Sigma Aldrich (Castle Hill, NSW, Australia).
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3

Solid-Phase Peptide Synthesis Reagents

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Dichloromethane (DCM) and N,N-Dimethylformamide (DMF) were purchased from Honeywell Riedel-de Haen™ and were used without further purification. Trifluoroacetic acid (TFA), triisopropylsilane (TIS), 1,2-ethanedithiol (EDT), piperidine and N,N-diisopropylethylamine (DIPEA) were purchased from Merck®. All Fmoc-L-AA-OH (with the respective side chain protecting group orthogonal to Fmoc-based SPPS) and 2-(1H-Benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU) were acquired from Novabiochem™ and Iris Biotech GmbH, respectively.
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4

Spectroscopic Characterization of Organic Compounds

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The NMR spectra (1H and 13C) of the synthesized organic compounds were performed using a nuclear magnetic resonance spectrometer (Varian 400 MHz). The emission spectra and the linked spectroscopic measurements were performed by a PerkinElmer LS 55 spectrofluorometer. The SEM images, FT-IR spectra and elemental analysis were performed with a HITACHI (SU5000), a Bruker Fourier Transform Infrared (ATR) and a Leco CHNS 932, respectively. The remaining lead ions in the suspension were determined by Analytic Jena, Contr AA 300 spectrophotometer using the atomic absorption values.
For the ordering of the used chemicals, various companies were preferred. The silica gel (70–230 mesh) used as both purification (column chromatography) and adsorbent materials was purchased from Fluka (Switzerland). Sodium azide, d-chloroform (CDCl3), 3-aminopropyltrimethoxysilane (APTMS, 97%), propargylamine, triethylamine, 2,4-dimethyl-3-ethylpyrrole, borontrifluoride diethyl etherate, N,N-diisopropylethylamine (DIPEA), 4-(chloromethyl)benzyl chloride, sodium ascorbate, copper(ii) sulphate were provided from Sigma-Aldrich. Solvents (dichloromethane, ethyl alcohol, toluene, petroleum ether (40–60%), N,N-dimethylformamide) and the metal nitrate salts were purchased from Merck Company (Germany, Darmstadt).
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5

Molecular Delivery Optimization for Cell Culture

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Opti-MEM without phenol red (Gibco) was purchased from ThermoFisher Scientific (San Jose, CA, USA). DMEM low glucose, with phenol red, fetal bovine serum (FBS), penicillin/streptomycin, l-glutamine, phosphate buffer saline (PBS) and trypsin/versene were all purchased from Biochrom (Berlin, Germany). Thiazolyl blue tetrazolium bromide (MTT), dimethyl sulfoxide (DMSO) and isopropanol were purchased from Merck KGaA (Calbiochem®, Darmstadt, Germany). N-hydroxybenzotriazole (HOBt) and 2-(1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium (HBTU) were purchased from Anaspec (San Jose, CA USA). N,N-diisopropylethylamine (DIPEA) and chloroquine diphosphate were purchased from Sigma-Aldrich Ltd. (Poole, UK). MitoTracker® Green (Cell Signaling Techology Inc., Beverly, MA, USA) FM was purchased from Cell Signaling Technology, Inc. (Beverly, MA, USA). Doxorubicin hydrochloride and hyperbranched poly(ethyleneimine) (PEI) of 1300 molecular weight (Lupasol® G20, water-free, 98%) were kindly donated by Regulon SA (Athens, Greece) and BASF (Ludwigshafen, Germany), respectively.
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6

PEG-Conjugation of Compound 5A

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Example 5

The crude Compound 5A was then dissolved in DCM (17.6 mL) and subsequently PEG12-OSu (1.756 g, 1.1 eq.) (Quanta BioDesign, cat #10262) and then N,N-Diisopropylethylamine (DIPEA) (0.24 mL, 0.60 eq.) (Sigma-Aldrich, Cat #387649) was added. The reaction mixture was stirred at room temperature for 4 h, then was loaded on to silica gel (88 g) and eluted with 1) 5% MeOH/EtOAc to remove excess amount of PEG-OSu, MMTr related by-product and N-hydroxysuccimide, followed by elution with 2) 5% MeOH/DCM to obtain Compound 6A (3.335 g, 66% yield). Analytical UPLC-MS: tR=1.53 min, m/z (ES+) found 2191.3.

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7

Synthesis and Evaluation of PEGylated Gemcitabine Conjugates

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Gemcitabine hydrochloride was obtained from LC Laboratories (Woburn,
MA). Retinoic acid, imidazole, tert-butyldimethylsilyl chloride (TBDMS-Cl),
dimethyl sulfoxide, triethylamine, pyrene,
N-Ethyl-N′-(3-dimethylaminopropyl)carbodiimide hydrochloride (EDC.HCl),
4-Dimethylaminopyridine (DMAP), tetrabutylammonium fluoride solution 1.0 M in
THF, cytidine deaminase, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide (MTT), N,N′-Diisopropylcarbodiimide,
N,N-Diisopropylethylamine (DIPEA) and Cathepsin B was
purchased from Sigma (St. Louis, MO). Methoxy polyethyleneglycol 750 was
obtained from Fisher Scientific (Santa Clara, CA). Methoxy-PEG2k-cholesterol
(CholPEG) was purchased from Nano CS (Boston, MA). Anhydrous dimethylformamide
was obtained from Acros Organics (Fair Law, NJ). The Cell Meter ™ TUNEL
Apoptosis Assay kit was purchased from AAT Bioquest (Sunnyvale, CA).
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8

Synthesis and Characterization of Lipid Compounds

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Myristic acid (Fluka Chemistry, 98%), palmitic acid (Riedel-de HaënTM, 98%), stearic acid (Sigma-Aldrich, 98.5%), oleic acid (Sigma-Aldrich, 99%), linoleic acid (Sigma-Aldrich, 99%), O-(1H-6-chlorobenzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HCTU, Novabiochem), Nile red (Carl Roth), pyrene (Alfa Aesar, 98%), samarium(iii) acetate hydrate (Sigma-Aldrich, 99.9%), sodium thiosulfate (Sigma-Aldrich, 99%), N,N-diisopropylethylamine (DIPEA, Sigma-Aldrich, 99.5%), N,N-dimethylformamide (DMF, VWR chemicals, 99.9%), tetrahydrofuran (Acros organics, 99.6%), diethyl ether (VWR international, 100%), acetone (VWR international, 99%), acetonitrile (VWR international, 99.95%), formic acid (Thermo Fisher Scientific, 99%), methanol (VWR international, 100%), hydrogen peroxide (Acros organics, 35 wt% solution in water), toluene (VWR international, 100%), trifluoroacetic acid (Sigma-Aldrich, 99%), acetic acid (Sigma-Aldrich, 99.8%), phosphate buffer saline 10× (PBS 10×, Euromedex) were used without further purification. Ultrapure water (18 MΩ cm) was obtained by passing in-house deionized water through a Millipore Milli-Q Biocel A10 purification unit. Bacto Tryptone (Sigma), yeast extract (Sigma), ampicillin (Sigma) and isopropyl β-d-thiogalactopyranoside (IPTG, VWR chemicals) were used for cell culture.
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9

Synthesis and Characterization of NIR Emitting Compounds

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2,3,3-Trimethylindolenine, 1,4-Butanesulfone, 4-Hydroxyphenyl boronic acid and 4-Amine-2,2,6,6-tetramethylpiperidinyloxy (4-amine-TEMPO) were purchased from Adamas; Tetrakis (triphenylphosphine) palladium, N,N-Diisopropylethylamine (DIPEA) and anhydrous ethanol were purchased from Sigma. All reactions were monitored by thin-layer chromatography (TLC). Flash chromatography was carried out using silica gel (200–300 mesh). 1H NMR spectra were recorded with an Agilent 600 MHz with trimethylchlorosilane (TMS) as an internal standard. Mass spectrometry (HRMS) was performed on a Bruker Ultraflextreme MALDI-TOF system or Shimadzu MALDI-7090. Electron paramagnetic resonance (EPR) was tested with Bruker A300-10/12. NIR spectroscopy was performed using a NIR spectrophotometer (Shimadzu, UV-3600). Photoluminescence was determined with a NIR fluorescence spectrometer (Lumina Fluorescence Spectrometer, Thermo Fisher, Waltham, MA, USA).
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10

Synthesis and Characterization of Cisplatin-Hyaluronate Conjugates

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Cis-Dichlorodiamine platinum (II) (cisplatin) was purchased from Strem Chemicals, Inc. (Newburyport, MA). Sodium hyaluronate was purchased from Contipro Inc (Dolní Dobrouč, Czech Republic). 1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxide hexafluorophosphate (HATU), and 3-(3-Dimethylaminopropyl)-1-ethyl-carbodiimide hydrochloride (EDC-HCl) was purchased from Chem-Impex International, Inc. (Wood Dale, IL). 1-Hydroxybenzotriazole hydrate (HOBt•H2O) was purchased from Advanced ChemTech (Louisville, KY). N-(tert-Butoxycarbonyl)glycine (Boc-Gly-OH), hydrogen peroxide solution (H2O2, 30 wt.% in H2O), succinic anhydride, (±)-α-tocopherol, N,N′-Dicyclohexylcarbodiimide (DCC), N,N-Dimethylpyridin-4-amine (DMAP), trifluoroacetic acid (TFA), N,N-Diisopropylethylamine (DIPEA), oxaliplatin, tetrabutylammonium hydroxide solution (TBA-OH, 40 wt.% in H2O), and anhydrous organic solvents were purchased from Sigma-Aldrich (Saint Louis, MO). Alexa Fluor ® 488 anti-CD8a, Alexa Fluor® 594 anti-CD11b, and Alexa Fluor® 647 anti-CD11c antibodies were purchased from BioLegend (San Diego, CA). All other chemicals and organic solvents were purchased from Thermo Fisher Scientific (Waltham, MA).
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