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6 protocols using accela uplc system

1

UPLC Analysis of Organic Compounds

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Chromatographic analysis was performed using a Thermo Fisher Accela UPLC system (Thermo Fisher Scientific, San Jose, CA, USA) equipped with a quaternary pump solvent management system, an online degasser, a diode-array detector (DAD), a column compartment, and an autosampler using a Phenomenex UPLC Kinetex C18 column (2.1 × 100 mm, 1.7 μm). The flow rate was maintained at 0.2 mL/min with a volume of injection of 3 μL. The mobile phase consisted of an aqueous solution of 0.1% formic acid (A) and acetonitrile (B) with an elution gradient of 5%-25% B from 0 to 5 min, 25%-60% B from 5 to 28 min, 60%-90% B from 28 to 38 min, and 90% B between 38 and 42 min. Detection wavelengths were set at 214, 254, and 280 nm, with a column oven temperature set at 25°C.
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2

Metabolite Extraction and Analysis from S. albus

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S. albus strains were cultivated in 25 mL TSB medium for 48 h at 28 °C. The main cultures containing 50 mL of SG were inoculated with 2 mL of preculture. After 5 days of cultivation at 28 °C, the secreted metabolites were extracted with ethyl acetate and butanol, followed by solvent evaporation. The dry extracts were dissolved in 0.5 mL methanol, and 1 μL of the dissolved sample was separated in a Dionex Ultimate 3000 RSLC system using a BEH C18, 100 × 2.1 mm, 1.7 μm dp column (Waters Corporation, Milford, MA, USA). The separation of a 1 μl sample was achieved via a linear gradient with a mobile phase of water/acetonitrile, each containing 0.1% formic acid, with a gradient from 5–95% acetonitrile applied over 9 min at a flow rate of 0.6 mL/min and 45 °C. High-resolution mass spectrometry was performed on an Accela UPLC system (Thermo Fisher Scientific, Waltham, MA, USA) coupled to a LTQ Orbitrap XL mass spectrometer ( Thermo Fisher Scientific, Waltham, MA, USA) operating in positive or negative ionization modes. Data were collected and analyzed with Thermo Xcalibur software, version 3.0 (Thermo Scientific, Waltham, MA, USA). The monoisotopic mass was searched in a natural product database.
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3

Reversed-phase UPLC-HRMS method for compound analysis

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Chromatographic separation was performed on an Accela UPLC system (Thermo Scientific) equipped with a Kinetex PFP column (100 × 4.6 mm, particle size 2.6 μm; Phenomenex). The elution was performed with the same HPLC-DAD gradient mode as described previously using water (solvent A), MeOH (solvent B), and ACN (solvent C), all acidified with 0.1% formic acid. The LC flow rate was 1 mL/min; the injection volume was 5 μL. The column oven temperature was 45°C and the sample tray temperature 4°C.
Eluted compounds were detected in negative mode in full mass scan (m/z 120 to 900) using a Thermo Scientific Orbitrap Mass Spectrometer Q Exactive equipped with a heated electrospray ionization source (HESI-II). Instrument parameters were as follows: sheath gas 60, auxiliary gas 20 (both arbitrary units), spray voltage 4 kV, capillary temperature 275°C, capillary voltage −60 V, tube lens voltage −135 V, skimmer voltage −20 V, and source temperature 300°C.
Mass spectra were recorded at a resolution of 50,000 with an automatic gain control (AGC) target of 500,000 and a maximum injection time of 500 ms.
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4

UPLC-MS Analysis of Phytochemicals

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Chromatographic analysis was performed using a Thermo Fisher Accela UPLC system (Thermo Fisher Scientific, San Jose, CA, United States) equipped with a quaternary pump solvent management system, an online degasser, a diode-array detector (DAD), a column compartment, and an auto-sampler using a Phenomenex UPLC Kinetex C18 column (2.1 × 100 mm, 1.7 μm). Chromatographic separation conditions were as follows: Flow rate: 0.2 ml/min; Injection volume: 3 μl; Column temperature: 25°C; Mobile phase A: an aqueous solution of 0.1% formic acid; Mobile phase B: acetonitrile; An elution gradient: 5%–25% B from 0–5 min, 25%–60% B from 5–28 min, 60%–90% B from 28–38 min and 90% B between 38–42 min; Detection wavelengths: 214, 254, and 280 nm. Mass spectrometry (MS) was performed using a Thermo Fisher Accela LTQ Orbitrap XL hybrid mass spectrometer (Thermo Fisher Scientific, Bremen, Germany) equipped with an electrospray ionization (ESI) interface. The ESI source was set in positive ionization mode. MS acquisition was set with a scan range of 150–1300 m/z and a resolving power of 30,000 for full-scan (Fan et al., 2018 (link)).
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5

Quantification of Paralytic Shellfish Toxins

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Cell pellets were freeze-dried, then extracted for PSTs and measured [53 (link)]. Briefly, samples were resuspended in 2 mL of 1 mM acetic acid and vortexed for 90 s at 100 °C for 5 min, sonicated for 5 min and filtered with 0.45 µm PVDF filter (Merck Millipore, Massachusetts, USA). Chromatographic separation (modified [57 (link)]) was performed on a Thermo Scientific™ ACCELA™ UPLC system coupled to a Thermo Scientific™ Q Exactive™ (ThermoFisher Scientific, Massachusetts, USA) mass spectrometer. Analysis was performed using an Acquity UPLC BEH Amide 130 A 1.7 µm 150 × 2.1 mm column with an injection volume of 5 µL. Mobile phases were A1 (water/formic acid/NH4OH at 500:0.075:0.3 v/v/v), B1 (acetonitrile/water/formic acid at 700:300:0.1 v/v/v). Certified standard solutions of C1,C2, GTX1, GTX2, GTX3, GTX4, GTX5, dcGTX2, dcGTX3, STX, dcSTX, NEO and dcNEO were purchased from National Research Council of Canada (NRC, Halifax, Canada). The limit of detection of the PST analysis method for all of the targeted compounds was 0.01 pg cell−1.
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6

Spectroscopic Characterization of Compounds

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Optical rotation was measured with a JASCO P-1020 polarimeter at 25 °C (JASCO, Gross-Umstadt, Germany). UV spectra were recorded on a Shimadzu UV-1800 spectrophotometer (Shimadzu, Kyoto, Japan) and IR spectra on a JASCO FT-IR (4100) spectrometer. 1 H and 13 C NMR, DEPT and 2D NMR spectra were measured on Bruker Avance III 500 MHz and Bruker Avance III 600 MHz (equipped with a Bruker Cryo Platform) instruments (Bruker, Fällanden, Switzerland). The chemical shift values (δ) are given in ppm and coupling constants in Hz. 1 H and 13 C chemical shifts were referenced to the solvent residual peaks for DMSO-d 6 at δ H 2.49 and δ C 39.5, respectively. HRESIMS experiments were carried out on a Thermo Accela UPLC-system combined with a Thermo Exactive mass spectrometer equipped with an electrospray ion source (Thermo Fisher Scientific, Bremen, Germany). Analytical HPLC was performed on an Agilent 1100 Series LC/MSD trap (Agilent Technologies, Santa Clara, CA, USA). Column chromatography was undertaken using silica gel 60 M (230-400 mesh) or Sephadex LH-20 (Pharmacia Biotech AB, Uppsala, Sweden). TLC analyses were performed on silica gel plates (Sil G/UV254 0.20 mm, Macherey-Nagel, Düren, Germany). All solvents used for chromatography, [α] D , UV and MS were HPLC grade.
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