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11 protocols using total akt

1

Western Blot Analysis of Signaling Proteins

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Pelleted cells were homogenized by sonication in lysis buffer [20 mM Tris-HCl, pH 7.4, 5 mM EDTA, 10 mM Na4P2O7, 100 mM NaF, 1% Nonidet P-40, 2 mM Na3VO4, protease inhibitor (10 μL per mL) and phosphatase inhibitor (20 μg per mL)], followed by centrifugation at 1200 × g for 10 min at 4 °C. Protein concentrations in supernatants were determined using a bicinchoninic acid (BCA) protein assay kit (23255; Pierce, Thermo Fisher Scientific) and bovine serum albumin as standard. Cell lysates (20 µg protein) were subjected to standard sodium dodecyl sulfate-polyacrylamide gel electrophoresis and proteins were transferred to a nitrocellulose membrane. Proteins were reversibly visualized using MemCode stain (24580; MemCode Reversible protein Stain, Pierce, Thermo Fisher Scientific) and detected using antibodies against phosphor-AKTSer473 (sc-33437, Santa Cruz Biotechnology), total AKT (05-591, Millipore), phospho-FOXO1Thr24/FOXO3aThr32 (#9464, Cell Signaling), total FOXO1 (#2880, Cell Signaling), phospho-acetyl-CoA carboxylaseSer79(#3661, Cell Signaling), and total acetyl-CoA carboxylase (#3661, Cell Signaling). Densitometric analysis was performed using Image lab 5.0 software from BioRad. Protein expression data were corrected to protein stain.
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2

Immunoblot Analysis of Signaling Proteins

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Cells were assayed as previously described [45 (link)]. Primary antibodies were as follows: total β-catenin was from BD Transduction Laboratories, total NHERF1 from ThermoFisher, total c-Myc, cyclin D1, p27, Rab7, RILP, V1G1, Cathepsin D, and α-Tubulin were from Santa Cruz Biotechnology Inc. (Santa Cruz, CA), total and phosphorylated pERK1/2 (pThr202/Tyr204) MAPK, total AKT, LC3, Beclin-1 (BECN1), and PARP were from Millipore.
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3

Antibody Sourcing for Cell Signaling

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HA and Ran antibodies were obtained from Abcam (ab18181, ab157213). Kapβ2 antibody was obtained from Santa Cruz Biotechnology (sc-11368). GAPDH and histone antibody were purchased from Cell signaling Technology (2118, 8135). PTEN, p-AKT and total AKT antibodies were purchased from Millipore, USA (04-035, 05-1003, 16-294).
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4

Antibody Validation for Signaling Proteins

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Antibodies were obtained from Cell Signaling Technology (anti-phospho-ERK1/2 (#9101), anti-ERK (#4695), anti-phospho p38 (#4511), anti-p38 (#9212), anti-phospho JNK (#4671), anti-JNK (#9252), anti-phospho AKT (#13038, and total AKT(#9272)), Millipore (anti-phospho-S112 PPARγ (#04-816), and Santa Cruz Biotechnology (anti-PPARγ (#sc-7273) and anti-phospho-394-MEK2 (#sc-101734)). Antibodies against anti-phospho-S273 PPARγ were previously generated as described1 (link).
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5

Antibody-Based Signaling Pathway Analysis

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Antibodies to phospho-Akt (Ser473), phospho-IR (Tyr1162/1163), phosphatase and tensin homolog (PTEN), and total Akt were from Millipore (Temecula, CA), to phospho-Erk1/2 (Thr202/Tyr204) and Erk1/2 from Cell Signaling Technologies (Danvers, MA), and to IRβ and IRS1 from Santa Cruz Biotechnology (Santa Cruz, CA). Radiolabeled [1,2-3H]–2-DG was obtained from American Radiolabeled Chemicals Inc. (St. Louis, MO). Cytochalasin and other chemicals were from Sigma-Aldrich. FGF-21 in serum was measured using an ELISA (R&D Systems, Minneapolis, MN). FGF-21 for cell culture studies was from BioVision (Milpitas, CA).
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6

Protein Extraction and Immunoblotting

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Cell proteins were extracted with buffer (20 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton-X 100), supplemented with protease and phosphatase inhibitors (GeneDepot, Barker, TX). For each sample, 50 μg of protein was resolved on SDS-PAGE and transferred to nitrocellulose membranes. Immunoblotting was performed using the following antibodies: INPP4B 1:1000 (Santa Cruz), FLAG M2 (1:5000) (Sigma-Aldrich), β-Tubulin (1:2000) (Millipore, Billerica, MA), total Akt (1:1000), phospho- S473 Akt (1:1000), COX-2 (1:1000), phospho-S235/236 S6 (1:1000), total S6 (1:1000), survivn/BIRC5 (1:1000), pan phospho-PKC (1:1000) (Cell Signaling Technology, Beverly, MA), PAK6 (1:400) (R&D Systems, Minneapolis, MN). Luminescent signal was captured on a Gel Logic 2000 imaging system with Carestream Molecular Imaging software (Carestream, Rochester, NY).
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7

Cellular Signaling Pathway Analysis

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All media for cell culture, was purchased from Invitrogen/Gibco ThermoFisher, Massachusetts, USA. MitoTEMPO was from Cayman Chemicals (Michigan, USA) (# 16621). Antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA) including: Rabbit anti-Phospho AKTSer473 (#4060), Total AKT (#4691), Phospho-PDK1 Anti-rabbit HRP (#A0545) was from Sigma-Aldrich (Munich, Germany) etc.
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8

Apoptosis Signaling Pathways in HT-29 Cells

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HT-29 cells were cultured with the aforementioned compounds for 16 h, and then cell lysates were prepared with lysis buffer. Equal amounts of protein were separated on 10% sodium dodecyl sulfate-polyacrylamide gels. Then, proteins were transferred to Hypond polyvinylidene fluoride membranes (Amersham Biosciences, Piscataway, NJ, USA) and blocked in 5% skim milk in Tris-buffered saline with 0.1% Tween-20 for 1 h at room temperature. Antibodies against cleaved caspase-3 (1:500; Cell Signaling Technology, Danvers, MA, USA), cleaved poly (ADP-ribose) polymerase (PARP) (1:1,000), Bcl-2 (1:1,000), phosphorylated Akt (1:1,000), total Akt (1:1,000), HSP70 (1:1,000), and β-actin (1:2,500; Sigma-Aldrich, Saint Louis, MO, USA) were diluted in 5% skim milk.
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9

Immunoblotting Assay for Protein Expression

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Cell lysates are prepared using Ripa Buffer and run in SDS-PAGE gel as per standard protocol. After the proteins are transferred in nitrocellulose membrane, blocking was done using 5% BSA. Primary and Secondary antibodies are mixed in 5% BSA. We used primary antibodies of EpCAM (Santa Cruz, sc-25308), phosphoAKT (Sigma Aldrich, SAB5600064), Total AKT (Sigma Aldrich, SAB5600066), Rad50 (Abcam, ab8913). Ku80 (Cell Signaling Technology, CST2180), phosphoATM (Cell Signaling Technology, CST D6H9), Total ATM (Cell Signaling Technology, CST2873), CHK2 (Cell Signaling Technology, CSTC13C1), Vimentin (Sigma Aldrich V6630), Twist (Santa Cruz, sc-15393) and Tubulin (Abcam, ab7291). Primary antibody of EpCAM has dilution of 1:200, while rests of the antibodies have dilution of 1:1000. We used anti-mouse HRP secondary antibody (ab6728) and anti-rabbit secondary antibody (Thermo Scientific 35512) at 1:10000 dilution.
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10

Protein Signaling Pathway Analysis

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Western blot analysis used specific antibodies for β-actin (Sigma Aldrich), p-Akt (Ser473) (#4060), total Akt (#9272), p-ERK1/ERK2 (Thr202/Tyr204) (#4370), total ERK1/ERK2 (#9102), Phospho-p70 S6 Kinase (Thr421/Ser424) (#9204), Phospho-p70 S6 Kinase (Thr389) (#9205), p70 S6 Kinase (49D7)(#2708), p-4EBP1(T37/46) (#2855) and total 4EBP1 (#9644) (Cell Signaling). MCF-7 cells were seeded at 500.000 cells in 10 cm dishes in growth media. Next day, cells were treated with Veh, 100 nM OA, PA, LA or SA for indicated times. Cell lysate was prepared using RIPA buffer. Samples were sonicated three times 10 seconds to shear the DNA. 10 µg protein was loaded onto 10% SDS gels. Antibodies were used at 1:500 except for β-actin (1:5000). Proteins were visualized using Odyssey LICOR imaging system.
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